RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 DNAI2Q9GZS0 605 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 CACNA2D2Q9NY47 1150 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 MARK1Q9P0L2 795 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 WDR35Q9P2L0 1181 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 EVLQ9UI08 416 aaPredicted RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 RASAL2Q9UJF2 1139 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 DNMT3LQ9UJW3 386 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 LSM7Q9UK45 103 aaKnown RBP13.11□□□□□ -0.31
UPF1-203ENST00000594504 NFE2L3Q9Y4A8 694 aa13.11□□□□□ -0.31
UPF1-203ENST00000594504 AP5Z1O43299 807 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 CEACAM1P13688 526 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 CSRP1P21291 193 aaKnown RBP13.1□□□□□ -0.31
UPF1-203ENST00000594504 TBXAS1P24557 533 aaPredicted RBP13.1□□□□□ -0.31
UPF1-203ENST00000594504 ZNF33AQ06730 810 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 GOLGA8FQ08AF8 430 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 GOLGA8DPQ0D2H9 430 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 EFEMP1Q12805 493 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 LMAN2Q12907 356 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 MAN2A1Q16706 1144 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 SDE2Q6IQ49 451 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 NT5C1BQ96P26 610 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 ARID3AQ99856 593 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 GTPBP2Q9BX10 602 aaKnown RBP13.1□□□□□ -0.31
UPF1-203ENST00000594504 SAMSN1Q9NSI8 373 aaKnown RBP13.1□□□□□ -0.31
UPF1-203ENST00000594504 RALYQ9UKM9 306 aaKnown RBP13.1□□□□□ -0.31
UPF1-203ENST00000594504 CLEC4EQ9ULY5 219 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 WASF3Q9UPY6 502 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 USP3Q9Y6I4 520 aa13.1□□□□□ -0.31
UPF1-203ENST00000594504 WDR87Q6ZQQ6 2873 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 KCNJ18B7U540 433 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 RALAP11233 206 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 EEF1GP26641 437 aaKnown RBP13.09□□□□□ -0.31
UPF1-203ENST00000594504 MAOBP27338 520 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 RAD23BP54727 409 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 YWHAEP62258 255 aaKnown RBP13.09□□□□□ -0.31
UPF1-203ENST00000594504 MYL5Q02045 173 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 CUL2Q13617 745 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 KCNJ12Q14500 433 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 GEN1Q17RS7 908 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 DUOXA1Q1HG43 343 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 SPDYCQ5MJ68 293 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 PEAR1Q5VY43 1037 aaPredicted RBP13.09□□□□□ -0.31
UPF1-203ENST00000594504 KLHDC10Q6PID8 442 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 SLC36A4Q6YBV0 504 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 CCDC186Q7Z3E2 898 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 SLC4A11Q8NBS3 891 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 EHBP1Q8NDI1 1231 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 LMO3Q8TAP4 145 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 TMEM176AQ96HP8 235 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 GABRG3Q99928 467 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 TUBGCP2Q9BSJ2 902 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 NAT10Q9H0A0 1025 aaKnown RBP13.09□□□□□ -0.31
UPF1-203ENST00000594504 PNPLA8Q9NP80 782 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 CISHQ9NSE2 258 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 FBXO10Q9UK96 956 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 SLC6A14Q9UN76 642 aa13.09□□□□□ -0.31
UPF1-203ENST00000594504 SPAARA0A1B0GVQ0 90 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 GTPBP10A4D1E9 387 aaKnown RBP13.08□□□□□ -0.32
UPF1-203ENST00000594504 TULP2O00295 520 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 PROS1P07225 676 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 PRKCSHP14314 528 aaPredicted RBP13.08□□□□□ -0.32
UPF1-203ENST00000594504 CORO1AP31146 461 aaKnown RBP13.08□□□□□ -0.32
UPF1-203ENST00000594504 PI4KAP42356 2102 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 LRMPQ12912 555 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 ANO6Q4KMQ2 910 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 HSP90AA4PQ58FG1 418 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 TCP11X2Q5H9J9 407 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 CDKAL1Q5VV42 579 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 FYB2Q5VWT5 728 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 KIAA1324Q6UXG2 1013 aaKnown RBP13.08□□□□□ -0.32
UPF1-203ENST00000594504 PIGZQ86VD9 579 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 DENND1CQ8IV53 801 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 MRGPRX1Q96LB2 322 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 HSPA12BQ96MM6 686 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 SCNM1Q9BWG6 230 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 INTS2Q9H0H0 1204 aaKnown RBP13.08□□□□□ -0.32
UPF1-203ENST00000594504 AGO1Q9UL18 857 aaKnown RBP13.08□□□□□ -0.32
UPF1-203ENST00000594504 STON1Q9Y6Q2 735 aa13.08□□□□□ -0.32
UPF1-203ENST00000594504 SLC12A8A0AV02 714 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 SYCE3A1L190 88 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 ZBTB24O43167 697 aaPredicted RBP13.07□□□□□ -0.32
UPF1-203ENST00000594504 ZNF217O75362 1048 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 PENKP01210 267 aaPredicted RBP13.07□□□□□ -0.32
UPF1-203ENST00000594504 SERPINF2P08697 491 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 IL12RB1P42701 662 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 PSEN1P49768 467 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 MFAP3P55082 362 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 FAM193AP78312 1265 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 GCNT1Q02742 428 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 GFPT1Q06210 699 aaPredicted RBP13.07□□□□□ -0.32
UPF1-203ENST00000594504 SEMA3BQ13214 749 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 VWA3BQ502W6 1294 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 MIIPQ5JXC2 388 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 UNQ6494/PRO21346Q6UXR6 183 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 GBP6Q6ZN66 633 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 RGL4Q8IZJ4 473 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 PPM1KQ8N3J5 372 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 ZNF276Q8N554 614 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 BPIFA3Q9BQP9 254 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 FUCA2Q9BTY2 467 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms