RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	DCLK3	Q9C098	648 aa		18.06	■□□□□ 0.48
MBD1-221	ENST00000589867	PLK2	Q9NYY3	685 aa		18.06	■□□□□ 0.48
MBD1-221	ENST00000589867	SDK1	Q7Z5N4	2213 aa		18.06	■□□□□ 0.48
MBD1-221	ENST00000589867	FAM170A	A1A519	330 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	NCAM1	P13591	858 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	HOXA6	P31267	233 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	KRT9	P35527	623 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	SOX5	P35711	763 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ZSCAN23	Q3MJ62	389 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	TAC4	Q86UU9	113 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	OLIG1	Q8TAK6	271 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ADAM32	Q8TC27	787 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	BHMT	Q93088	406 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	FAM149B1	Q96BN6	582 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	MYEOV	Q96EZ4	313 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	SLC2A13	Q96QE2	648 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ADAM33	Q9BZ11	813 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ZDHHC4	Q9NPG8	344 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ARHGEF4	Q9NR80	690 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ZSCAN32	Q9NX65	697 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	ZNF510	Q9Y2H8	683 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	CFAP54	Q96N23	3096 aa		18.05	■□□□□ 0.48
MBD1-221	ENST00000589867	PRR23A	A6NEV1	266 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	SMTNL1	A8MU46	457 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	PRRT4	C9JH25	899 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	SART1	O43290	800 aa	Known RBP	18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	TPM2	P07951	284 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	GRIA2	P42262	883 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	GABRB2	P47870	512 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	SGSH	P51688	502 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	SEC13	P55735	322 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	NOMO3	P69849	1222 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	FMO1	Q01740	532 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	FAM133B	Q5BKY9	247 aa	Known RBP	18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	OTUD1	Q5VV17	481 aa	Predicted RBP	18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	RNF43	Q68DV7	783 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	NADSYN1	Q6IA69	706 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	LUZP1	Q86V48	1076 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	TERB1	Q8NA31	727 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	SUMF1	Q8NBK3	374 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	ANKRD20A12P	Q8NF67	263 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	POPDC2	Q9HBU9	364 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	WDR35	Q9P2L0	1181 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867	PCDHGA2	Q9Y5H1	932 aa		18.04	■□□□□ 0.48
MBD1-221	ENST00000589867		A0A1B0GTH6	734 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	GOLGA6L7	A0A1B0GV03	622 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	APOD	P05090	189 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	SLC6A4	P31645	630 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	TNFRSF4	P43489	277 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	FNTB	P49356	437 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	TBX4	P57082	545 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	YWHAZ	P63104	245 aa	Known RBP	18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	RING1	Q06587	406 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	C2CD6	Q53TS8	623 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	C2orf27A	Q580R0	203 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	SYT13	Q7L8C5	426 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	DEFB106A	Q8N104	65 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	IL17RC	Q8NAC3	791 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	NEK11	Q8NG66	645 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	BAP1	Q92560	729 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	EXOC4	Q96A65	974 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	PCDHB18P	Q96TA0	734 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	DNAJC17	Q9NVM6	304 aa	Known RBP	18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	ASNSD1	Q9NWL6	643 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	CALCOCO1	Q9P1Z2	691 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	DEC1	Q9P2X7	70 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	XPO7	Q9UIA9	1087 aa	Known RBP	18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	DAAM1	Q9Y4D1	1078 aa		18.03	■□□□□ 0.48
MBD1-221	ENST00000589867	IRAK2	O43187	625 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	HR	O43593	1189 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	ADAM23	O75077	832 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	GRAP2	O75791	330 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	LATS1	O95835	1130 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	CYP1A1	P04798	512 aa	Predicted RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	GLI1	P08151	1106 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	HOXD9	P28356	352 aa	Predicted RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	CHKA	P35790	457 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	PXN	P49023	591 aa	Predicted RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	HARS2	P49590	506 aa	Known RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	SRSF5	Q13243	272 aa	Known RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	NNT	Q13423	1086 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	TRNP1	Q6NT89	227 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	TMEM92	Q6UXU6	159 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	SLC26A9	Q7LBE3	791 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	CCDC33	Q8N5R6	958 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	TMEM35B	Q8NCS4	154 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	ZNF397	Q8NF99	534 aa	Predicted RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	FAM126A	Q9BYI3	521 aa	Predicted RBP	18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	TLR6	Q9Y2C9	796 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	STARD13	Q9Y3M8	1113 aa		18.02	■□□□□ 0.48
MBD1-221	ENST00000589867	SPAG17	Q6Q759	2223 aa		18.02	■□□□□ 0.47
MBD1-221	ENST00000589867	SGK1	O00141	431 aa		18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	ACSL4	O60488	711 aa		18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	TSPAN3	O60637	253 aa		18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	TRUB2	O95900	331 aa	Known RBP	18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	TFE3	P19532	575 aa	Predicted RBP	18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	PTMS	P20962	102 aa		18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	TIE1	P35590	1138 aa		18.01	■□□□□ 0.47
MBD1-221	ENST00000589867	STAT1	P42224	750 aa		18.01	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms