RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ALDH2P05091 517 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 AMPD1P23109 780 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 RBL1P28749 1068 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 PHBP35232 272 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 GRIK1P39086 918 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 MAGEA6P43360 314 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 MAGEA11P43364 429 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 CXCR3P49682 368 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 ATP1A2P50993 1020 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 PITX1P78337 314 aaPredicted RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 PDIA2Q13087 525 aaKnown RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 AUHQ13825 339 aaKnown RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 GPNMBQ14956 572 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 PDK1Q15118 436 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 ANKRD33Q7Z3H0 272 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 EPS8L3Q8TE67 593 aaKnown RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 CASD1Q96PB1 797 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 TMEM209Q96SK2 561 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 TMEM175Q9BSA9 504 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 RHOBTB2Q9BYZ6 727 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 ABCC13Q9NSE7 274 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.69□□□□□ -0.06
LIG3-205ENST00000585941 DTLQ9NZJ0 730 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 DNAJB4Q9UDY4 337 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 LGALS13Q9UHV8 139 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 XPO7Q9UIA9 1087 aaKnown RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 ADAM28Q9UKQ2 775 aa14.69□□□□□ -0.06
LIG3-205ENST00000585941 PRG3Q9Y2Y8 225 aaPredicted RBP14.69□□□□□ -0.06
LIG3-205ENST00000585941 SYNJ2BP-COX16A0A087WUM0 186 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 C5orf60A6NFR6 353 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 E7EVH7 732 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 F8W810 466 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 TRIM66O15016 1216 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 DGKIO75912 1065 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 CXCL10P02778 98 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 CCL5P13501 91 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 ATP2A2P16615 1042 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 GBE1Q04446 702 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 SMARCB1Q12824 385 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 DPYSQ14117 519 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 KCNJ11Q14654 390 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 PAFAH1B3Q15102 231 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 SLC39A12Q504Y0 691 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 HEATR6Q6AI08 1181 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 KCNT2Q6UVM3 1135 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 NPAS4Q8IUM7 802 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 ZBED8Q8IZ13 594 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 PYROXD2Q8N2H3 581 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 ATP11CQ8NB49 1132 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 TFB1MQ8WVM0 346 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 C8orf48Q96LL4 319 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 OLFM3Q96PB7 478 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 RNF208Q9H0X6 261 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 WDCPQ9H6R7 721 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 COX16Q9P0S2 106 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 FETUBQ9UGM5 382 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 SLC12A6Q9UHW9 1150 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 SMIM23A6NLE4 172 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 DCDC2CA8MYV0 355 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 TNFRSF10BO14763 440 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 PPP1R12AO14974 1030 aaPredicted RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 NCAM2O15394 837 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 PQBP1O60828 265 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 SLC5A3P53794 718 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 YWHAGP61981 247 aaKnown RBP eCLIP14.68□□□□□ -0.06
LIG3-205ENST00000585941 NR1H3Q13133 447 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 SEMA3BQ13214 749 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 MRPL58Q14197 206 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 RASA2Q15283 850 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 LONRF1Q17RB8 773 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 VARS2Q5ST30 1063 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 UBAP2Q5T6F2 1119 aaKnown RBP14.68□□□□□ -0.06
LIG3-205ENST00000585941 ANKRD22Q5VYY1 191 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 ZNF280DQ6N043 979 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 RFX8Q6ZV50 586 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 TDRPQ86YL5 185 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 VPS52Q8N1B4 723 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 ARHGAP18Q8N392 663 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 PYROXD1Q8WU10 500 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 CENPTQ96BT3 561 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 TOX2Q96NM4 488 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 EPAS1Q99814 870 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 BRD8Q9H0E9 1235 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 FBXO44Q9H4M3 255 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 RAB6BQ9NRW1 208 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 PCDHB5Q9Y5E4 795 aa14.68□□□□□ -0.06
LIG3-205ENST00000585941 CREB3O43889 395 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 SPAG6O75602 509 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 FGFR3P22607 806 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 HTR7P34969 479 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 MMP13P45452 471 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 SLCO1A2P46721 670 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 RABGGTBP53611 331 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 TPI1P60174 286 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 SLC10A2Q12908 348 aaPredicted RBP14.67□□□□□ -0.06
LIG3-205ENST00000585941 SKIDA1Q1XH10 827 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 CTXN3Q4LDR2 81 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 BRMS1LQ5PSV4 323 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 BTBD8Q5XKL5 378 aa14.67□□□□□ -0.06
LIG3-205ENST00000585941 MCUQ8NE86 351 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms