RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PEBP4Q96S96 227 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TUBB2BQ9BVA1 445 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TASP1Q9H6P5 420 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ZWILCHQ9H900 591 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TRPC7Q9HCX4 862 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ARHGEF38Q9NXL2 777 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 COX16Q9P0S2 106 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 SLC12A6Q9UHW9 1150 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TRANK1O15050 2925 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 C2orf78A6NCI8 922 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 KCNK3O14649 394 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 MSI1O43347 362 aaKnown RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 MOSPD3O75425 235 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 IGLV3-27P01718 113 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 APOEP02649 317 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RARAP10276 462 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 MBL2P11226 248 aaPredicted RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 TCF4P15884 667 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 HDCP19113 662 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ADRA1BP35368 520 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 CETN2P41208 172 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 CCR2P41597 374 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ZNF135P52742 658 aaPredicted RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 ATXN1P54253 815 aaKnown RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 SLC7A9P82251 487 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RAB6CQ53S08 254 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 EFHC2Q5JST6 749 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ZFYVE27Q5T4F4 411 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 NUGGCQ68CJ6 796 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 TXNDC8Q6A555 127 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 CES5AQ6NT32 575 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 SYCE2Q6PIF2 218 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 VSIG1Q86XK7 387 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 MIB1Q86YT6 1006 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 MAP7D3Q8IWC1 876 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 UNC45BQ8IWX7 931 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RCOR2Q8IZ40 523 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 PABPC5Q96DU9 382 aaKnown RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 OSBPL9Q96SU4 736 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 RAB6CQ9H0N0 254 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 ADAM7Q9H2U9 754 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 FZD10Q9ULW2 581 aa11.16□□□□□ -0.62
SS18-213ENST00000579640 MRPS23Q9Y3D9 190 aaKnown RBP11.16□□□□□ -0.62
SS18-213ENST00000579640 KCNU1A8MYU2 1149 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 ZRANB2O95218 330 aaKnown RBP eCLIP11.15□□□□□ -0.62
SS18-213ENST00000579640 KRT1P04264 644 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 GJC1P36383 396 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 MARCKSL1P49006 195 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 DNA2P51530 1060 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 COPS2P61201 443 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 AMPD2Q01433 879 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 PDK2Q15119 407 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 TEAD2Q15562 447 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 CLUL1Q15846 466 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 ZC3H12AQ5D1E8 599 aaKnown RBP11.15□□□□□ -0.62
SS18-213ENST00000579640 GPR158Q5T848 1215 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 SEL1L2Q5TEA6 688 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 TXNRD3NBQ6F5E7 133 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 CYP4V2Q6ZWL3 525 aaPredicted RBP11.15□□□□□ -0.62
SS18-213ENST00000579640 CCDC185Q8N715 623 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 MAB21L3Q8N8X9 362 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 ATP6V0D2Q8N8Y2 350 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 ALG3Q92685 438 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 TCEAL4Q96EI5 215 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 FCRL2Q96LA5 508 aaPredicted RBP11.15□□□□□ -0.62
SS18-213ENST00000579640 FAM161BQ96MY7 647 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 HAPLN3Q96S86 360 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 SNRNP25Q9BV90 132 aaKnown RBP11.15□□□□□ -0.62
SS18-213ENST00000579640 KLF16Q9BXK1 252 aaPredicted RBP11.15□□□□□ -0.62
SS18-213ENST00000579640 RNF38Q9H0F5 515 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 TKTL2Q9H0I9 626 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 CLDND1Q9NY35 253 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 CLEC1BQ9P126 229 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 AP4E1Q9UPM8 1137 aa11.15□□□□□ -0.62
SS18-213ENST00000579640 PRRC2BQ5JSZ5 2229 aaKnown RBP11.15□□□□□ -0.62
SS18-213ENST00000579640 NOTCH4Q99466 2003 aa11.15□□□□□ -0.63
SS18-213ENST00000579640 CKMP06732 381 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 WEE1P30291 646 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 NTHL1P78549 312 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 DPYSL2Q16555 572 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 SLC5A9Q2M3M2 681 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 SMTNL2Q2TAL5 461 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 KCNT1Q5JUK3 1230 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 HABP4Q5JVS0 413 aaKnown RBP11.14□□□□□ -0.63
SS18-213ENST00000579640 ATAT1Q5SQI0 421 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 DDX42Q86XP3 938 aaKnown RBP eCLIP11.14□□□□□ -0.63
SS18-213ENST00000579640 ARL14EPQ8N8R7 260 aaPredicted RBP11.14□□□□□ -0.63
SS18-213ENST00000579640 KCTD6Q8NC69 237 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 FAM71BQ8TC56 605 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 HSPH1Q92598 858 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 AZIN2Q96A70 460 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 RIPOR3Q96MK2 946 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 SLC46A2Q9BY10 475 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 OSBPL2Q9H1P3 480 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.14□□□□□ -0.63
SS18-213ENST00000579640 RNF14Q9UBS8 474 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 LRRD1A4D1F6 860 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 ZNF487B1APH4 448 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 TBX10O75333 385 aa11.14□□□□□ -0.63
SS18-213ENST00000579640 URI1O94763 535 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms