RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 EFHC1Q5JVL4 640 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 C10orf76Q5T2E6 689 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 NAA35Q5VZE5 725 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 TAC4Q86UU9 113 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 ERICH1Q86X53 443 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 ATRIPQ8WXE1 791 aa20.31■□□□□ 0.84
SS18-209ENST00000578595 RTN4Q9NQC3 1192 aaKnown RBP20.31■□□□□ 0.84
SS18-209ENST00000578595 EML5Q05BV3 1969 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 APOEP02649 317 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 TIE1P35590 1138 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 SLC11A2P49281 568 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 DGKGP49619 791 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 JAM2P57087 298 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 TAF5Q15542 800 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 ZNF528Q3MIS6 628 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 SYPL2Q5VXT5 272 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 NUGGCQ68CJ6 796 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 SFTPA1Q8IWL2 248 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 UNC45BQ8IWX7 931 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 EZH1Q92800 747 aaPredicted RBP20.3■□□□□ 0.84
SS18-209ENST00000578595 RNF34Q969K3 372 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 C2orf42Q9NWW7 574 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 MARK1Q9P0L2 795 aa20.3■□□□□ 0.84
SS18-209ENST00000578595 ZFHX2Q9C0A1 2572 aaPredicted RBP20.3■□□□□ 0.84
SS18-209ENST00000578595 GOLGA8SH3BPF8 625 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 CACNG3O60359 315 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 HSF2BPO75031 334 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 LSM8O95777 96 aaKnown RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 CAVIN2O95810 425 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 FYNP06241 537 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 NBL1P41271 181 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 NRLP54845 237 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 RNASE9P60153 205 aaKnown RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 CDK17Q00537 523 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 CDR2Q01850 454 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 MESP2Q0VG99 397 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 FAM102AQ5T9C2 384 aaPredicted RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 ALYREFQ86V81 257 aaKnown RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 ZNF677Q86XU0 584 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 ETFBKMTQ8IXQ9 262 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 DEFB106AQ8N104 65 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 CCDC33Q8N5R6 958 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 TERB1Q8NA31 727 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 CPA5Q8WXQ8 436 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 NKD2Q969F2 451 aaPredicted RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 HHIPQ96QV1 700 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 ZDHHC4Q9NPG8 344 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 POLR3BQ9NW08 1133 aaPredicted RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 ZSCAN32Q9NX65 697 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 NOCTQ9UK39 431 aaKnown RBP20.29■□□□□ 0.84
SS18-209ENST00000578595 RALGAPA1Q6GYQ0 2036 aa20.29■□□□□ 0.84
SS18-209ENST00000578595 K7EQS6 105 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 TRIM24O15164 1050 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 KLF8O95600 359 aaPredicted RBP20.28■□□□□ 0.84
SS18-209ENST00000578595 TRUB2O95900 331 aaKnown RBP20.28■□□□□ 0.84
SS18-209ENST00000578595 MRE11P49959 708 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 SLC6A3Q01959 620 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 C2CD6Q53TS8 623 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 OLFML1Q6UWY5 402 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 CPXM2Q8N436 756 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 DDX1Q92499 740 aaKnown RBP20.28■□□□□ 0.84
SS18-209ENST00000578595 C18orf8Q96DM3 657 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 ASNSD1Q9NWL6 643 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 TLR6Q9Y2C9 796 aa20.28■□□□□ 0.84
SS18-209ENST00000578595 RIF1Q5UIP0 2472 aaKnown RBP20.27■□□□□ 0.84
SS18-209ENST00000578595 TYW5A2RUC4 315 aaKnown RBP20.27■□□□□ 0.84
SS18-209ENST00000578595 ANTXRLA6NF34 631 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 CHURC1-FNTBB4DL54 471 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 IRAK2O43187 625 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 DAB1O75553 588 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 GLI1P08151 1106 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 CCDC172P0C7W6 258 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 GBP1P32455 592 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 PXNP49023 591 aaPredicted RBP20.27■□□□□ 0.84
SS18-209ENST00000578595 FNTBP49356 437 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 NOMO3P69849 1222 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 FANCCQ00597 558 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 DMC1Q14565 340 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 NFKBIBQ15653 356 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 MPPE1Q53F39 396 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 ADGRF1Q5T601 910 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 ZDHHC17Q8IUH5 632 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 ALLCQ8N6M5 410 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 ZNF513Q8N8E2 541 aaPredicted RBP20.27■□□□□ 0.84
SS18-209ENST00000578595 USP33Q8TEY7 942 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 NAP1L5Q96NT1 182 aaPredicted RBP20.27■□□□□ 0.84
SS18-209ENST00000578595 FAM126AQ9BYI3 521 aaPredicted RBP20.27■□□□□ 0.84
SS18-209ENST00000578595 DDIT4Q9NX09 232 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 PCDHGA2Q9Y5H1 932 aa20.27■□□□□ 0.84
SS18-209ENST00000578595 SDK1Q7Z5N4 2213 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 FAM186AA6NE01 2351 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 A0A1B0GTH6 734 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 ACSL4O60488 711 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 LATS1O95835 1130 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 IGLV3-27P01718 113 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 FERP16591 822 aa20.26■□□□□ 0.83
SS18-209ENST00000578595 CDH5P33151 784 aaPredicted RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 PITX1P78337 314 aaPredicted RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 MRPS21P82921 87 aaKnown RBP20.26■□□□□ 0.83
SS18-209ENST00000578595 FMO1Q01740 532 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms