RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 NR2E1Q9Y466 385 aa14.21□□□□□ -0.13
CCDC40-209ENST00000573474 GREB1Q4ZG55 1949 aa14.21□□□□□ -0.14
CCDC40-209ENST00000573474 GBF1Q92538 1859 aa14.21□□□□□ -0.14
CCDC40-209ENST00000573474 PHF2O75151 1096 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ZMYND10O75800 440 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 TBX18O95935 607 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 F11P03951 625 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 IL4RP24394 825 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ATP5C1P36542 298 aaKnown RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 RGS19P49795 217 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 TUBP50607 506 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ZNF135P52742 658 aaPredicted RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 TBX4P57082 545 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 SMAD3P84022 425 aaKnown RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 TFDP2Q14188 446 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 TRIP4Q15650 581 aaPredicted RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 CYP1B1Q16678 543 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 GLE1Q53GS7 698 aaKnown RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ANKRD20A8PQ5CZ79 823 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 PPP6R3Q5H9R7 873 aaPredicted RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 CCDC70Q6NSX1 233 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 KLHDC10Q6PID8 442 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ELMSAN1Q6PJG2 1045 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 BBS12Q6ZW61 710 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ZDHHC14Q8IZN3 488 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 PRELID2Q8N945 189 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 TSC1Q92574 1164 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 MAGOHBQ96A72 148 aaKnown RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 FAF2Q96CS3 445 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 RNF157Q96PX1 679 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 HAPLN3Q96S86 360 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 KRT12Q99456 494 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 OSBPL2Q9H1P3 480 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 CCSER2Q9H7U1 834 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 PRDM16Q9HAZ2 1276 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 ZNF334Q9HCZ1 680 aaPredicted RBP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 MAN1C1Q9NR34 630 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.2□□□□□ -0.14
CCDC40-209ENST00000573474 DNMT3LQ9UJW3 386 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 MYO16Q9Y6X6 1858 aa14.2□□□□□ -0.14
CCDC40-209ENST00000573474 UQCRHLA0A096LP55 91 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 KCNU1A8MYU2 1149 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 H3BRJ5 948 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 MSI1O43347 362 aaKnown RBP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 CST8O60676 142 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 UQCRHP07919 91 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 HNRNPA1P09651 372 aaKnown RBP eCLIP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 EPCAMP16422 314 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 HOXA9P31269 272 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 CHRNA3P32297 505 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 ARL4AP40617 200 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 ADCY2Q08462 1091 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 MMRN1Q13201 1228 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 ERCC6LQ2NKX8 1250 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 KLHL7Q8IXQ5 586 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 PYROXD2Q8N2H3 581 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 C12orf50Q8NA57 414 aaPredicted RBP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 TTC13Q8NBP0 860 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 CCDC26Q8TAB7 109 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 TIFAQ96CG3 184 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 SLC39A13Q96H72 371 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 RUNDC3BQ96NL0 473 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 FRMD8P1Q9BZ68 369 aaPredicted RBP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 MAGEB5Q9BZ81 275 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 SLITRK6Q9H5Y7 841 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 LRRC19Q9H756 370 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 ANLNQ9NQW6 1124 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 TMPRSS4Q9NRS4 437 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 CWC15Q9P013 229 aaKnown RBP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 SLC12A6Q9UHW9 1150 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 RASAL2Q9UJF2 1139 aa14.19□□□□□ -0.14
CCDC40-209ENST00000573474 HBS1LQ9Y450 684 aaKnown RBP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 V9GYY5 206 aaPredicted RBP14.19□□□□□ -0.14
CCDC40-209ENST00000573474 ZNF638Q14966 1978 aaKnown RBP14.18□□□□□ -0.14
CCDC40-209ENST00000573474 SLC12A8A0AV02 714 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 PER2O15055 1255 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 CCL16O15467 120 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 FGF19O95750 216 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 APOEP02649 317 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 ZFXP17010 805 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-209ENST00000573474 COILP38432 576 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-209ENST00000573474 HCAR3P49019 387 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 RING1Q06587 406 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 MTA1Q13330 715 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 CCNG2Q16589 344 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 TMEM150AQ86TG1 271 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 MIB1Q86YT6 1006 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 TMC8Q8IU68 726 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 GPR161Q8N6U8 529 aaKnown RBP14.18□□□□□ -0.14
CCDC40-209ENST00000573474 PCDH19Q8TAB3 1148 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-209ENST00000573474 GDPD5Q8WTR4 605 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 C1orf54Q8WWF1 131 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 FCRL2Q96LA5 508 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-209ENST00000573474 CSPG4P5Q96PW8 444 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 LRRC3Q9BY71 257 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 DCLK3Q9C098 648 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 NACA2Q9H009 215 aa14.18□□□□□ -0.14
CCDC40-209ENST00000573474 DDX47Q9H0S4 455 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms