RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FAM217AQ8IXS0 508 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 ZC3H3Q8IXZ2 948 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 FAM186BQ8IYM0 893 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CHPFQ8IZ52 775 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 PGBD3Q8N328 593 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 UBR7Q8N806 425 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 KDF1Q8NAX2 398 aaPredicted RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 BHMTQ93088 406 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 SPATA32Q96LK8 384 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 XPO6Q96QU8 1125 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 SCNM1Q9BWG6 230 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 MKRN2Q9H000 416 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 NACA2Q9H009 215 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 MMRN2Q9H8L6 949 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CISHQ9NSE2 258 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CLIC5Q9NZA1 410 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 WDR35Q9P2L0 1181 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 THAP10Q9P2Z0 257 aaPredicted RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 DNMT3LQ9UJW3 386 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 NAGPAQ9UK23 515 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 AGO1Q9UL18 857 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 CIZ1Q9ULV3 898 aaPredicted RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 SLC6A14Q9UN76 642 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 CYP8B1Q9UNU6 501 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 FRMD4BQ9Y2L6 1034 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 SLC27A6Q9Y2P4 619 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 FASNP49327 2511 aaKnown RBP7.06□□□□□ -1.28
VPS53-213ENST00000572334 BAHCC1Q9P281 2608 aa7.06□□□□□ -1.28
VPS53-213ENST00000572334 SPAARA0A1B0GVQ0 90 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 A0A1W2PQ27 194 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 A0A1W2PQ64 194 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 A0A1W2PQD8 194 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 AP5Z1O43299 807 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 CLSTN1O94985 981 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 ZNF202O95125 648 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 HMBSP08397 361 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 MSNP26038 577 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 CORO1AP31146 461 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 GTF2H1P32780 548 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 PSMC2P35998 433 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 PSEN1P49768 467 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 COPAP53621 1224 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 PMS1P54277 932 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 BNC1Q01954 994 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 EFEMP1Q12805 493 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 BYSLQ13895 437 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 DUOXA1Q1HG43 343 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 EDRF1Q3B7T1 1238 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 FUT11Q495W5 492 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 PREPLQ4J6C6 727 aaPredicted RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 PKDCCQ504Y2 493 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 KRT39Q6A163 491 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 SLC36A4Q6YBV0 504 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 METTL3Q86U44 580 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 CPXM2Q8N436 756 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 TRIML1Q8N9V2 468 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 ANKRD52Q8NB46 1076 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 C1orf216Q8TAB5 229 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 TMEM176AQ96HP8 235 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 FAXDC2Q96IV6 333 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 HEXIM2Q96MH2 286 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 HSPA12BQ96MM6 686 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 CAMK1GQ96NX5 476 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 NUSAP1Q9BXS6 441 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 ADAM33Q9BZ11 813 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 UBXN6Q9BZV1 441 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 GDPD2Q9HCC8 539 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 DNAAF2Q9NVR5 837 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 RAB20Q9NX57 234 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 WSB2Q9NYS7 404 aaPredicted RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 USP36Q9P275 1121 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 RASAL2Q9UJF2 1139 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 LSM7Q9UK45 103 aaKnown RBP7.05□□□□□ -1.28
VPS53-213ENST00000572334 ZMIZ1Q9ULJ6 1067 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 COQ4Q9Y3A0 265 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 SLCO1B1Q9Y6L6 691 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 STON1Q9Y6Q2 735 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 NBEAQ8NFP9 2946 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 MYLKQ15746 1914 aa7.05□□□□□ -1.28
VPS53-213ENST00000572334 ITPR1Q14643 2758 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 LOC400499M0QZD8 3231 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 FAM221BA6H8Z2 402 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 ARHGAP33O14559 1287 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 HYAL3O43820 417 aaPredicted RBP7.04□□□□□ -1.28
VPS53-213ENST00000572334 ZNF217O75362 1048 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 IGLV3-19P01714 112 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 CFIP05156 583 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 KRT13P13646 458 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 PRKCHP24723 683 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 MAOBP27338 520 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 HOXD9P28356 352 aaPredicted RBP7.04□□□□□ -1.28
VPS53-213ENST00000572334 DPP6P42658 865 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 PRCPP42785 496 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 MXI1P50539 228 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 SGSHP51688 502 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 YWHAGP61981 247 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS53-213ENST00000572334 KRT85P78386 507 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 COG7P83436 770 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 PNOCQ13519 176 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 TRIP4Q15650 581 aaPredicted RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms