RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MTA1Q13330 715 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 UBXN2BQ14CS0 331 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 TANGO2Q6ICL3 276 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 CC2D1AQ6P1N0 951 aaPredicted RBP21.49■■□□□ 1.03
VPS53-210ENST00000571456 WDR59Q6PJI9 974 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 FAM183BPQ6ZVS7 135 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 YAF2Q8IY57 180 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 TC2NQ8N9U0 490 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 SLC22A12Q96S37 553 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 CYP2S1Q96SQ9 504 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 DEF6Q9H4E7 631 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 ARHGAP20Q9P2F6 1191 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 ADAMTS1Q9UHI8 967 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 ANGPTL2Q9UKU9 493 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 HBS1LQ9Y450 684 aaKnown RBP21.49■■□□□ 1.03
VPS53-210ENST00000571456 MTF2Q9Y483 593 aaPredicted RBP21.49■■□□□ 1.03
VPS53-210ENST00000571456 COL4A3Q01955 1670 aa21.49■■□□□ 1.03
VPS53-210ENST00000571456 KIF26AQ9ULI4 1882 aaPredicted RBP21.48■■□□□ 1.03
VPS53-210ENST00000571456 E2F8A0AVK6 867 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 PIK3R2O00459 728 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 DDX3XO00571 662 aaKnown RBP eCLIP21.48■■□□□ 1.03
VPS53-210ENST00000571456 PRAMEF12O95522 483 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 NCAM1P13591 858 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 PFKPQ01813 784 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 ACAP1Q15027 740 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 POTEHQ6S545 545 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 MMS22LQ6ZRQ5 1243 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 MON1BQ7L1V2 547 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 C3orf20Q8ND61 904 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 ANP32BQ92688 251 aaKnown RBP21.48■■□□□ 1.03
VPS53-210ENST00000571456 OTUB2Q96DC9 234 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 CCDC42Q96M95 316 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 SERPINB11Q96P15 392 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 SLC2A13Q96QE2 648 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.48■■□□□ 1.03
VPS53-210ENST00000571456 TRMT61BQ9BVS5 477 aaKnown RBP21.48■■□□□ 1.03
VPS53-210ENST00000571456 DCLK3Q9C098 648 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 ISCUQ9H1K1 167 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 TRPV5Q9NQA5 729 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 MARCH2Q9P0N8 246 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 TBC1D14Q9P2M4 693 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 LSM7Q9UK45 103 aaKnown RBP21.48■■□□□ 1.03
VPS53-210ENST00000571456 STAP1Q9ULZ2 295 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 ZNF510Q9Y2H8 683 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 CPQQ9Y646 472 aa21.48■■□□□ 1.03
VPS53-210ENST00000571456 FAM170BA6NMN3 283 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 CHADO15335 359 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 DAB1O75553 588 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 NOS2P35228 1153 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 PGFP49763 221 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 GSDMDP57764 484 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 PRKCQQ04759 706 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 RING1Q06587 406 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 SPEM2Q0P670 501 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 MLF2Q15773 248 aaPredicted RBP21.47■■□□□ 1.03
VPS53-210ENST00000571456 ZNF77Q15935 545 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 SLC18A3Q16572 532 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 FAM102AQ5T9C2 384 aaPredicted RBP21.47■■□□□ 1.03
VPS53-210ENST00000571456 VITQ6UXI7 678 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 GPIHBP1Q8IV16 184 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 MCOLN2Q8IZK6 566 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 ST13P5Q8NFI4 369 aaPredicted RBP21.47■■□□□ 1.03
VPS53-210ENST00000571456 OLIG1Q8TAK6 271 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 SH3RF2Q8TEC5 729 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 CLEC4CQ8WTT0 213 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 DNASE1L2Q92874 299 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 IRF7Q92985 503 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 PLD4Q96BZ4 506 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 C11orf70Q9BRQ4 267 aa21.47■■□□□ 1.03
VPS53-210ENST00000571456 KLF16Q9BXK1 252 aaPredicted RBP21.47■■□□□ 1.03
VPS53-210ENST00000571456 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.47■■□□□ 1.03
VPS53-210ENST00000571456 ANKRD62A6NC57 917 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 LEFTY2O00292 366 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 AKR1B10O60218 316 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 GBP1P32455 592 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 VIPR2P41587 438 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 MATKP42679 507 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 EFEMP1Q12805 493 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 PTP4A2Q12974 167 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 MTF1Q14872 753 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 PDGFRLQ15198 375 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 NDRG1Q92597 394 aaKnown RBP21.46■■□□□ 1.03
VPS53-210ENST00000571456 KXD1Q9BQD3 176 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 RPP25Q9BUL9 199 aaKnown RBP21.46■■□□□ 1.03
VPS53-210ENST00000571456 TJP2Q9UDY2 1190 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 RASAL2Q9UJF2 1139 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 SH3BP1Q9Y3L3 701 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 PAXBP1Q9Y5B6 917 aa21.46■■□□□ 1.03
VPS53-210ENST00000571456 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 ZNF263O14978 683 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 FTLP02792 175 aaPredicted RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 FYNP06241 537 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 DESP17661 470 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 FECHP22830 423 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 EIF4A3P38919 411 aaKnown RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 MLLT6P55198 1093 aaPredicted RBP21.45■■□□□ 1.02
VPS53-210ENST00000571456 SLC44A4Q53GD3 710 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 C10orf76Q5T2E6 689 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 NUGGCQ68CJ6 796 aa21.45■■□□□ 1.02
VPS53-210ENST00000571456 ALKBH5Q6P6C2 394 aaKnown RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms