RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ALDH1A2O94788 518 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 IGLV3-27P01718 113 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 CYBBP04839 570 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 FYNP06241 537 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 PTK2Q05397 1052 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 KCNMA1Q12791 1236 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 ANO7Q6IWH7 933 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 BEND5Q7L4P6 421 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 PARD6AQ9NPB6 346 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 ZDHHC4Q9NPG8 344 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 PCDHGC3Q9UN70 934 aa21.17■□□□□ 0.98
CLK3-225ENST00000569063 EP300Q09472 2414 aaPredicted RBP21.16■□□□□ 0.98
CLK3-225ENST00000569063 EML5Q05BV3 1969 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 FOXN3O00409 490 aaPredicted RBP21.16■□□□□ 0.98
CLK3-225ENST00000569063 GFRA2O00451 464 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 NCAM1P13591 858 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 NTSR1P30989 418 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 ZNF445P59923 1031 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 RING1Q06587 406 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 SPEM2Q0P670 501 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 USP39Q53GS9 565 aaKnown RBP21.16■□□□□ 0.98
CLK3-225ENST00000569063 ADGRF1Q5T601 910 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 DDI1Q8WTU0 396 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 TRIM62Q9BVG3 475 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 SLC2A11Q9BYW1 496 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 LHX5Q9H2C1 402 aa21.16■□□□□ 0.98
CLK3-225ENST00000569063 E5RJQ4 531 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 PAPSS1O43252 624 aaPredicted RBP21.15■□□□□ 0.98
CLK3-225ENST00000569063 MBD3O95983 291 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 CLCN1P35523 988 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 ID4P47928 161 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 PDCLQ13371 301 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 PLK5Q496M5 336 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 MPPE1Q53F39 396 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 KLHDC7AQ5VTJ3 777 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 CDKAL1Q5VV42 579 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 EGFLAMQ63HQ2 1017 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 NUGGCQ68CJ6 796 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 UNC45BQ8IWX7 931 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 FAM71AQ8IYT1 594 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 WDTC1Q8N5D0 677 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 OLIG1Q8TAK6 271 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 PIWIL1Q96J94 861 aaKnown RBP21.15■□□□□ 0.98
CLK3-225ENST00000569063 TPSD1Q9BZJ3 242 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 DUSP15Q9H1R2 295 aaPredicted RBP21.15■□□□□ 0.98
CLK3-225ENST00000569063 USP18Q9UMW8 372 aa21.15■□□□□ 0.98
CLK3-225ENST00000569063 DCLK1O15075 740 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 NNTQ13423 1086 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 CSRP2Q16527 193 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 SDE2Q6IQ49 451 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 SASS6Q6UVJ0 657 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 C11orf74Q86VG3 221 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 CHPFQ8IZ52 775 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 DQX1Q8TE96 717 aaKnown RBP21.14■□□□□ 0.97
CLK3-225ENST00000569063 AZIN2Q96A70 460 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 FAM149B1Q96BN6 582 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 ACOX2Q99424 681 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 GABRG3Q99928 467 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 IRX2Q9BZI1 471 aaPredicted RBP21.14■□□□□ 0.97
CLK3-225ENST00000569063 SEMA4GQ9NTN9 838 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 NAALADL1Q9UQQ1 740 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 TLR6Q9Y2C9 796 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 DMXL1Q9Y485 3027 aa21.14■□□□□ 0.97
CLK3-225ENST00000569063 A0A1W2PQF6 199 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 TCRBV21S2A2A0A5A6 115 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 PES1O00541 588 aaKnown RBP21.13■□□□□ 0.97
CLK3-225ENST00000569063 EPN2O95208 641 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 HOXB2P14652 356 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 SLC11A2P49281 568 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 TBX4P57082 545 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 BPIFB4P59827 614 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 YWHAZP63104 245 aaKnown RBP21.13■□□□□ 0.97
CLK3-225ENST00000569063 LMNB2Q03252 620 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 GEN1Q17RS7 908 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 SLC47A2Q86VL8 602 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 RMDN1Q96DB5 314 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 SERPINB11Q96P15 392 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 NAA15Q9BXJ9 866 aaKnown RBP21.13■□□□□ 0.97
CLK3-225ENST00000569063 POPDC2Q9HBU9 364 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 ANO10Q9NW15 660 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 CLEC4EQ9ULY5 219 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 PCDHGA5Q9Y5G8 931 aa21.13■□□□□ 0.97
CLK3-225ENST00000569063 PRR5-ARHGAP8B1AHC4 643 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 RHOBTB1O94844 696 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 PNMA6AP0CW24 399 aaPredicted RBP21.12■□□□□ 0.97
CLK3-225ENST00000569063 UCHL3P15374 230 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 HOXD9P28356 352 aaPredicted RBP21.12■□□□□ 0.97
CLK3-225ENST00000569063 KRT9P35527 623 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 ARHGAP8P85298 464 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 DRAP1Q14919 205 aaPredicted RBP21.12■□□□□ 0.97
CLK3-225ENST00000569063 ELF2Q15723 593 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 SYPL2Q5VXT5 272 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 ANKS1BQ7Z6G8 1248 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 TMA16Q96EY4 203 aaKnown RBP21.12■□□□□ 0.97
CLK3-225ENST00000569063 SLC39A13Q96H72 371 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 PPP1R13BQ96KQ4 1090 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 FCRL2Q96LA5 508 aaPredicted RBP21.12■□□□□ 0.97
CLK3-225ENST00000569063 CPXM1Q96SM3 734 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 CD248Q9HCU0 757 aa21.12■□□□□ 0.97
CLK3-225ENST00000569063 FANCLQ9NW38 375 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms