RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLK3-222ENST00000568232 IL37Q9NZH6 218 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 IL17BQ9UHF5 180 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 DACH1Q9UI36 760 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 NUDT5Q9UKK9 219 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 CLEC4EQ9ULY5 219 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 SLC27A6Q9Y2P4 619 aa12.41□□□□□ -0.42
CLK3-222ENST00000568232 COL6A6A6NMZ7 2263 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 KNTC1P50748 2209 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 LDHAP00338 332 aaKnown RBP12.4□□□□□ -0.42
CLK3-222ENST00000568232 CST3P01034 146 aaPredicted RBP12.4□□□□□ -0.42
CLK3-222ENST00000568232 WNT1P04628 370 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 ANAPC15P60006 121 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 BROXQ5VW32 411 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 TMEM215Q68D42 235 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 KDM7AQ6ZMT4 941 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 PAQR9Q6ZVX9 377 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 DYMQ7RTS9 669 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 ZNF366Q8N895 744 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 RBBP8NLQ8NC74 664 aaPredicted RBP12.4□□□□□ -0.42
CLK3-222ENST00000568232 B3GALNT2Q8NCR0 500 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 MED8Q96G25 268 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 CALML4Q96GE6 196 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 SLC6A18Q96N87 628 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 ELF4Q99607 663 aaPredicted RBP12.4□□□□□ -0.42
CLK3-222ENST00000568232 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLK3-222ENST00000568232 LHX5Q9H2C1 402 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 OSER1Q9NX31 292 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 ELOVL2Q9NXB9 296 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 LSM7Q9UK45 103 aaKnown RBP12.4□□□□□ -0.42
CLK3-222ENST00000568232 CLCA2Q9UQC9 943 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 PCDHB1Q9Y5F3 818 aa12.4□□□□□ -0.42
CLK3-222ENST00000568232 PTPN13Q12923 2485 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 FAM92AA1XBS5 289 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 A8MXQ7 604 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 NPC1O15118 1278 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 VILLO15195 856 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 DFNA5O60443 496 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 TACC1O75410 805 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 BEST1O76090 585 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 TNNC2P02585 160 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 IGHV4-34P06331 123 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 CASP5P51878 434 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 PCBP4P57723 403 aaKnown RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 INSM1Q01101 510 aaPredicted RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 BNIP3Q12983 259 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 L1TD1Q5T7N2 865 aaKnown RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 FYB2Q5VWT5 728 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 KIAA1614Q5VZ46 1190 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 SERPINA13PQ6UXR4 307 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 Q6ZNB5 142 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 FAM35AQ86V20 835 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 KRI1Q8N9T8 703 aaKnown RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 FAM184AQ8NB25 1140 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 OR2T3Q8NH03 318 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 UCMAQ8WVF2 138 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 HVCN1Q96D96 273 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 PIWIL1Q96J94 861 aaKnown RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 HIC2Q96JB3 615 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 ACCSQ96QU6 501 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 MED10Q9BTT4 135 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 ACE2Q9BYF1 805 aaPredicted RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 CIPCQ9C0C6 399 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 BTBD1Q9H0C5 482 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 MRPL44Q9H9J2 332 aaKnown RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 NXF1Q9UBU9 619 aaKnown RBP12.39□□□□□ -0.43
CLK3-222ENST00000568232 MYLKQ15746 1914 aa12.39□□□□□ -0.43
CLK3-222ENST00000568232 WNT9AO14904 365 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 KLK10O43240 276 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 PRPF6O94906 941 aaKnown RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 PENKP01210 267 aaPredicted RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 KLKB1P03952 638 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 MPOP05164 745 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 GARTP22102 1010 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 ATP5C1P36542 298 aaKnown RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 UBA7P41226 1012 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 BCAT1P54687 386 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 UCNP55089 124 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 RACK1P63244 317 aaKnown RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 CAMK2GQ13555 558 aaPredicted RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 DUOXA2Q1HG44 320 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 WDR72Q3MJ13 1102 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 DHX40Q8IX18 779 aaKnown RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 DCBLD1Q8N8Z6 715 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 ZMIZ2Q8NF64 920 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 LLPHQ9BRT6 129 aaKnown RBP12.38□□□□□ -0.43
CLK3-222ENST00000568232 FGFBP2Q9BYJ0 223 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 EBF2Q9HAK2 575 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 EXOC7Q9UPT5 735 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 NUMA1Q14980 2115 aa12.38□□□□□ -0.43
CLK3-222ENST00000568232 FAM47DPA6NHR8 397 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 GCNT3O95395 438 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 MT-CO3P00414 261 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 RPS14P62263 151 aaKnown RBP12.37□□□□□ -0.43
CLK3-222ENST00000568232 GRIN1Q05586 938 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 GOLGA8FQ08AF8 430 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 VAC14Q08AM6 782 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 GOLGA8DPQ0D2H9 430 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 TRAPPC11Q7Z392 1133 aa12.37□□□□□ -0.43
CLK3-222ENST00000568232 ANKS1BQ7Z6G8 1248 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms