RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	FAM114A1	Q8IWE2	563 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	SCUBE3	Q8IX30	993 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	TERB1	Q8NA31	727 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	ZNF606	Q8WXB4	792 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	GOLGA1	Q92805	767 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	BHMT	Q93088	406 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	PLD4	Q96BZ4	506 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	HSFY1	Q96LI6	401 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	SLC2A11	Q9BYW1	496 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	TPSD1	Q9BZJ3	242 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	DUSP15	Q9H1R2	295 aa	Predicted RBP	7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	ARRDC1-AS1	Q9H2J1	176 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	THAP9	Q9H5L6	903 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	SEMA4G	Q9NTN9	838 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	SFMBT1	Q9UHJ3	866 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	INVS	Q9Y283	1065 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	SLC27A6	Q9Y2P4	619 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	DMXL1	Q9Y485	3027 aa		7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	TPR	P12270	2363 aa	Known RBP	7.23	□□□□□ -1.25
SF3B3-209	ENST00000567635	TNRC6B	Q9UPQ9	1833 aa	Known RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PRRT4	C9JH25	899 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PIK3R2	O00459	728 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	ZBTB24	O43167	697 aa	Predicted RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	THAP12	O43422	761 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	TIMM44	O43615	452 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	LETM1	O95202	739 aa	Predicted RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	EPN2	O95208	641 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	LTF	P02788	710 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	HNRNPL	P14866	589 aa	Known RBP eCLIP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PON1	P27169	355 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	GBP1	P32455	592 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	GPD2	P43304	727 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	RPL34	P49207	117 aa	Known RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	E2F5	Q15329	346 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	ARHGAP44	Q17R89	818 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	EXOC3L4	Q17RC7	722 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	CT47A1	Q5JQC4	288 aa	Predicted RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	ADGRF1	Q5T601	910 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	EGFLAM	Q63HQ2	1017 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	SMYD5	Q6GMV2	418 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	MSANTD2	Q6P1R3	559 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	DENND1B	Q6P3S1	775 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	GJB7	Q6PEY0	223 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	TRIM65	Q6PJ69	517 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PRR23C	Q6ZRP0	262 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	TOGARAM2	Q6ZUX3	1019 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	DGLUCY	Q7Z3D6	616 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	UNC45B	Q8IWX7	931 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	FAM217A	Q8IXS0	508 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	CHPF	Q8IZ52	775 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PGBD3	Q8N328	593 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	CPXM2	Q8N436	756 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	MDGA1	Q8NFP4	955 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	OLIG1	Q8TAK6	271 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	DDI1	Q8WTU0	396 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	STK32A	Q8WU08	396 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	HMGB4	Q8WW32	186 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	TMA16	Q96EY4	203 aa	Known RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PIWIL1	Q96J94	861 aa	Known RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	SLC4A5	Q9BY07	1137 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	MIS12	Q9H081	205 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	NUP62CL	Q9H1M0	184 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	ZDHHC4	Q9NPG8	344 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	LMBRD1	Q9NUN5	540 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	DLL3	Q9NYJ7	618 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	BCCIP	Q9P287	314 aa	Known RBP eCLIP	7.22	□□□□□ -1.25	2e-7	■■■■□ 24.4
SF3B3-209	ENST00000567635	DACH1	Q9UI36	760 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	CDV3	Q9UKY7	258 aa	Known RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	HCN2	Q9UL51	889 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	PCDHGA5	Q9Y5G8	931 aa		7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	7.22	□□□□□ -1.25
SF3B3-209	ENST00000567635	DOCK4	Q8N1I0	1966 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	TCRBV21S2A2	A0A5A6	115 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	BCLAF3	A2AJT9	711 aa	Known RBP	7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	FOXN3	O00409	490 aa	Predicted RBP	7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	GFRA2	O00451	464 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	NPC1	O15118	1278 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	SART1	O43290	800 aa	Known RBP	7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	MSI1	O43347	362 aa	Known RBP	7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	TSPAN3	O60637	253 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	CAVIN2	O95810	425 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	LATS1	O95835	1130 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	NCAM1	P13591	858 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	HOXB2	P14652	356 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	GNA15	P30679	374 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	P2RY2	P41231	377 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	WAS	P42768	502 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	ATXN1	P54253	815 aa	Known RBP	7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	ZNF445	P59923	1031 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	APBA1	Q02410	837 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	CREB5	Q02930	508 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	PTK2	Q05397	1052 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	RING1	Q06587	406 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	CCDC6	Q16204	474 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	MEA1	Q16626	185 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	MAN2A1	Q16706	1144 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	DPCR1	Q3MIW9	517 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	VWA3B	Q502W6	1294 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	MPPE1	Q53F39	396 aa		7.21	□□□□□ -1.26
SF3B3-209	ENST00000567635	PLA2G2C	Q5R387	149 aa		7.21	□□□□□ -1.26

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms