RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 BYSLQ13895 437 aaKnown RBP21.65■■□□□ 1.06
CLN3-219ENST00000565778 ARHGAP44Q17R89 818 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 GJB7Q6PEY0 223 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 TRIM65Q6PJ69 517 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 SCUBE3Q8IX30 993 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 OLIG1Q8TAK6 271 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 NETO1Q8TDF5 533 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 CLEC4CQ8WTT0 213 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 P2RY11Q96G91 374 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 RTKNQ9BST9 563 aa21.65■■□□□ 1.06
CLN3-219ENST00000565778 DCDC2BA2VCK2 349 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 THAP12O43422 761 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 TSPAN3O60637 253 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 BCKDHBP21953 392 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 P2RY2P41231 377 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 GPD2P43304 727 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 EXOC3L4Q17RC7 722 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 MPPE1Q53F39 396 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 DENND1BQ6P3S1 775 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 ZNF606Q8WXB4 792 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 ERLEC1Q96DZ1 483 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 SPACA7Q96KW9 195 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 NUP62CLQ9H1M0 184 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 SMOC1Q9H4F8 434 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 VPS45Q9NRW7 570 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 SLC27A6Q9Y2P4 619 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 KIAA1549LQ6ZVL6 1849 aa21.64■■□□□ 1.05
CLN3-219ENST00000565778 SDK1Q7Z5N4 2213 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 MSI1O43347 362 aaKnown RBP21.63■■□□□ 1.05
CLN3-219ENST00000565778 CAVIN2O95810 425 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 ACADSBP45954 432 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 PLA2G2CQ5R387 149 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 PMS2CLQ68D20 193 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 FAM114A1Q8IWE2 563 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 TMA16Q96EY4 203 aaKnown RBP21.63■■□□□ 1.05
CLN3-219ENST00000565778 THAP9Q9H5L6 903 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 DACH1Q9UI36 760 aa21.63■■□□□ 1.05
CLN3-219ENST00000565778 DCHS1Q96JQ0 3298 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 A0A1W2PQF6 199 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 BCLAF3A2AJT9 711 aaKnown RBP21.62■■□□□ 1.05
CLN3-219ENST00000565778 WASH3PC4AMC7 463 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 GFRA2O00451 464 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 NCAM1P13591 858 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 GABRG2P18507 467 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 GNA15P30679 374 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 DHPSP49366 369 aaPredicted RBP21.62■■□□□ 1.05
CLN3-219ENST00000565778 APBA1Q02410 837 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 GEN1Q17RS7 908 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 DPCR1Q3MIW9 517 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 ADGRF1Q5T601 910 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 MSANTD2Q6P1R3 559 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 LPCAT2Q7L5N7 544 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 UNC45BQ8IWX7 931 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 FAM217AQ8IXS0 508 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 FRMD1Q8N878 549 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 IPO4Q8TEX9 1081 aaKnown RBP21.62■■□□□ 1.05
CLN3-219ENST00000565778 UCMAQ8WVF2 138 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 FAM149B1Q96BN6 582 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 SLC2A11Q9BYW1 496 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 ACP6Q9NPH0 428 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 CACNA2D2Q9NY47 1150 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 APEX2Q9UBZ4 518 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 CLEC4EQ9ULY5 219 aa21.62■■□□□ 1.05
CLN3-219ENST00000565778 EML5Q05BV3 1969 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 GTPBP10A4D1E9 387 aaKnown RBP21.61■■□□□ 1.05
CLN3-219ENST00000565778 SLC30A4O14863 429 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 PON1P27169 355 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 ERCC5P28715 1186 aaPredicted RBP21.61■■□□□ 1.05
CLN3-219ENST00000565778 TBX4P57082 545 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 MAN2A1Q16706 1144 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 KIAA1211LQ6NV74 962 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 TMEFF1Q8IYR6 380 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 STK32AQ8WU08 396 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 PIWIL1Q96J94 861 aaKnown RBP21.61■■□□□ 1.05
CLN3-219ENST00000565778 GABRG3Q99928 467 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 RAD54BQ9Y620 910 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 STON1Q9Y6Q2 735 aa21.61■■□□□ 1.05
CLN3-219ENST00000565778 RALGAPA1Q6GYQ0 2036 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 SART1O43290 800 aaKnown RBP21.6■■□□□ 1.05
CLN3-219ENST00000565778 LATS1O95835 1130 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 PRKCSHP14314 528 aaPredicted RBP21.6■■□□□ 1.05
CLN3-219ENST00000565778 RPL34P49207 117 aaKnown RBP21.6■■□□□ 1.05
CLN3-219ENST00000565778 SLC11A2P49281 568 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 ZNF445P59923 1031 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 MAP7D1Q3KQU3 841 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 HSP90AA4PQ58FG1 418 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 CLEC17AQ6ZS10 378 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 ANKS1BQ7Z6G8 1248 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 CIPCQ9C0C6 399 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 RXFP3Q9NSD7 469 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 LMBRD1Q9NUN5 540 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 ELOVL2Q9NXB9 296 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 STOML2Q9UJZ1 356 aa21.6■■□□□ 1.05
CLN3-219ENST00000565778 MED19A0JLT2 244 aaPredicted RBP21.59■■□□□ 1.05
CLN3-219ENST00000565778 BECN2A8MW95 431 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 CAPN9O14815 690 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 NPC1O15118 1278 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 TIMM44O43615 452 aa21.59■■□□□ 1.05
CLN3-219ENST00000565778 ARID5AQ03989 594 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms