RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SLC12A8A0AV02 714 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 TULP2O00295 520 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 XPO1O14980 1071 aaKnown RBP17.93■□□□□ 0.46
CLN3-216ENST00000565316 CFIP05156 583 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 HMBSP08397 361 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 PMS1P54277 932 aaKnown RBP17.93■□□□□ 0.46
CLN3-216ENST00000565316 BCAT1P54687 386 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 GFPT1Q06210 699 aaPredicted RBP17.93■□□□□ 0.46
CLN3-216ENST00000565316 PDE4CQ08493 712 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 SEMA3BQ13214 749 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 TRIP4Q15650 581 aaPredicted RBP17.93■□□□□ 0.46
CLN3-216ENST00000565316 GEN1Q17RS7 908 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 GOLGA7BQ2TAP0 167 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 RSRC2Q7L4I2 434 aaKnown RBP17.93■□□□□ 0.46
CLN3-216ENST00000565316 DENND1CQ8IV53 801 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 DEFB124Q8NES8 71 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 SLC35C1Q96A29 364 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 PLD4Q96BZ4 506 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 TSG101Q99816 390 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 SLC2A11Q9BYW1 496 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 GTPBP4Q9BZE4 634 aaKnown RBP17.93■□□□□ 0.46
CLN3-216ENST00000565316 ULBP1Q9BZM6 244 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 SLC6A17Q9H1V8 727 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 TSPAN16Q9UKR8 245 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 CACNA1EQ15878 2313 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 PROS1P07225 676 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 IL12RB1P42701 662 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 YWHAEP62258 255 aaKnown RBP17.92■□□□□ 0.46
CLN3-216ENST00000565316 LRRC63Q05C16 580 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 BST2Q10589 180 aaKnown RBP17.92■□□□□ 0.46
CLN3-216ENST00000565316 FUT11Q495W5 492 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 SGO2Q562F6 1265 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 DCAF17Q5H9S7 520 aaPredicted RBP17.92■□□□□ 0.46
CLN3-216ENST00000565316 TCERG1LQ5VWI1 586 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 TRIML1Q8N9V2 468 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 NDRG1Q92597 394 aaKnown RBP17.92■□□□□ 0.46
CLN3-216ENST00000565316 ERLEC1Q96DZ1 483 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 CD93Q9NPY3 652 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 OLA1Q9NTK5 396 aaKnown RBP17.92■□□□□ 0.46
CLN3-216ENST00000565316 ELOVL2Q9NXB9 296 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 ARMCX3Q9UH62 379 aaPredicted RBP17.92■□□□□ 0.46
CLN3-216ENST00000565316 KIAA1257Q9ULG3 409 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 CLEC4EQ9ULY5 219 aa17.92■□□□□ 0.46
CLN3-216ENST00000565316 PCDH15Q96QU1 1955 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 ARHGAP33O14559 1287 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 PMM2O15305 246 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 SMC2O95347 1197 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 CYBBP04839 570 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 STARD3Q14849 445 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 EIF4HQ15056 248 aaKnown RBP17.91■□□□□ 0.46
CLN3-216ENST00000565316 E2F5Q15329 346 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 PKDCCQ504Y2 493 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 ANKS1BQ7Z6G8 1248 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 SCML4Q8N228 414 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 UCMAQ8WVF2 138 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 KCTD13Q8WZ19 329 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 FOXJ1Q92949 421 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 HSPA12BQ96MM6 686 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 MKRN2Q9H000 416 aaKnown RBP17.91■□□□□ 0.46
CLN3-216ENST00000565316 SLC32A1Q9H598 525 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 FSCN3Q9NQT6 498 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 ITM2CQ9NQX7 267 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 USP36Q9P275 1121 aaKnown RBP17.91■□□□□ 0.46
CLN3-216ENST00000565316 HESX1Q9UBX0 185 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 STOML2Q9UJZ1 356 aa17.91■□□□□ 0.46
CLN3-216ENST00000565316 HBS1LQ9Y450 684 aaKnown RBP17.91■□□□□ 0.46
CLN3-216ENST00000565316 PCNX2A6NKB5 2137 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 ASPMQ8IZT6 3477 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 O00370 1275 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 TIMM44O43615 452 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 VDRP11473 427 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 CD6P30203 668 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 FOXC1Q12948 553 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 BSPRYQ5W0U4 402 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 KIAA1324Q6UXG2 1013 aaKnown RBP17.9■□□□□ 0.46
CLN3-216ENST00000565316 FMNL3Q8IVF7 1028 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 TIGD1Q96MW7 591 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 PRDM16Q9HAZ2 1276 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 LRRC4Q9HBW1 653 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 WSB2Q9NYS7 404 aaPredicted RBP17.9■□□□□ 0.46
CLN3-216ENST00000565316 NFE2L3Q9Y4A8 694 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 CEP192Q8TEP8 1941 aa17.9■□□□□ 0.46
CLN3-216ENST00000565316 TRIM49BA6NDI0 452 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 YJEFN3A6XGL0 299 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 E7ENQ6 273 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 NDUFS2O75306 463 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 SETSIPP0DME0 302 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 C7P10643 843 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 CD19P15391 556 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 TBXAS1P24557 533 aaPredicted RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 ATXN3P54252 364 aaPredicted RBP17.89■□□□□ 0.45
CLN3-216ENST00000565316 ADIGQ0VDE8 80 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 ZNF234Q14588 700 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 SYCP2LQ5T4T6 812 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 TMEM215Q68D42 235 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 LCLAT1Q6UWP7 414 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 HDDC3Q8N4P3 179 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 UBA3Q8TBC4 463 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 DDI1Q8WTU0 396 aa17.89■□□□□ 0.45
CLN3-216ENST00000565316 DNASE2BQ8WZ79 361 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms