RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 IGLV3-27P01718 113 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 CCR1P32246 355 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 CXCR3P49682 368 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 HDAC4P56524 1084 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 SMAD2Q15796 467 aaKnown RBP21.46■■□□□ 1.03
CLN3-212ENST00000564574 NUGGCQ68CJ6 796 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 UNC45BQ8IWX7 931 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 UBE2Q2Q8WVN8 375 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 SMARCD2Q92925 531 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 E2F7Q96AV8 911 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 ACSF2Q96CM8 615 aaPredicted RBP21.46■■□□□ 1.03
CLN3-212ENST00000564574 ZFRQ96KR1 1074 aaKnown RBP21.46■■□□□ 1.03
CLN3-212ENST00000564574 ZSWIM3Q96MP5 696 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 ASB16Q96NS5 453 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 ALS2CR12Q96Q35 445 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 MYADMQ96S97 322 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 PIGVQ9NUD9 493 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 OBP2AQ9NY56 170 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 COX16Q9P0S2 106 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 CALCOCO1Q9P1Z2 691 aa21.46■■□□□ 1.03
CLN3-212ENST00000564574 TMEM110-MUSTN1A8MSY1 372 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 LRCH4O75427 683 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 APOEP02649 317 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 AIF1P55008 147 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 SH3PXD2AQ5TCZ1 1133 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 CC2D1AQ6P1N0 951 aaPredicted RBP21.45■■□□□ 1.02
CLN3-212ENST00000564574 POTEHQ6S545 545 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 DAAM2Q86T65 1068 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 ARID3BQ8IVW6 561 aaPredicted RBP21.45■■□□□ 1.02
CLN3-212ENST00000564574 CELF5Q8N6W0 485 aaKnown RBP21.45■■□□□ 1.02
CLN3-212ENST00000564574 KIAA1958Q8N8K9 716 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 USP13Q92995 863 aaPredicted RBP21.45■■□□□ 1.02
CLN3-212ENST00000564574 RNF34Q969K3 372 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 FCRL2Q96LA5 508 aaPredicted RBP21.45■■□□□ 1.02
CLN3-212ENST00000564574 PHF7Q9BWX1 381 aaPredicted RBP21.45■■□□□ 1.02
CLN3-212ENST00000564574 DCLK3Q9C098 648 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 EPS15L1Q9UBC2 864 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 ALG6Q9Y672 507 aa21.45■■□□□ 1.02
CLN3-212ENST00000564574 GRID2IPA4D2P6 1211 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 LEFTY2O00292 366 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 STC2O76061 302 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 LAMP2P13473 410 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 USP4Q13107 963 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 HADHQ16836 314 aaKnown RBP21.44■■□□□ 1.02
CLN3-212ENST00000564574 ARL13BQ3SXY8 428 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 FAM78AQ5JUQ0 283 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 PTCRAQ6ISU1 281 aaPredicted RBP21.44■■□□□ 1.02
CLN3-212ENST00000564574 SLFN11Q7Z7L1 901 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 ARFGAP1Q8N6T3 406 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 LRRC57Q8N9N7 239 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 TRIM58Q8NG06 486 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 AZIN2Q96A70 460 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 NTAN1Q96AB6 310 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 COL25A1Q9BXS0 654 aaPredicted RBP21.44■■□□□ 1.02
CLN3-212ENST00000564574 WDCPQ9H6R7 721 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 GKN1Q9NS71 199 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 SMPD4Q9NXE4 827 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 ARHGEF38Q9NXL2 777 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 SLC12A6Q9UHW9 1150 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 LSM7Q9UK45 103 aaKnown RBP21.44■■□□□ 1.02
CLN3-212ENST00000564574 ZNF510Q9Y2H8 683 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 SH3BP1Q9Y3L3 701 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 NR2E1Q9Y466 385 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 CAPN6Q9Y6Q1 641 aa21.44■■□□□ 1.02
CLN3-212ENST00000564574 UNC80Q8N2C7 3258 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 USP27XA6NNY8 438 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 PRPSAP2O60256 369 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 PALMO75781 387 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 PRAMEF12O95522 483 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 LATS1O95835 1130 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 HMBSP08397 361 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 MIPP30301 263 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 HARS2P49590 506 aaKnown RBP21.43■■□□□ 1.02
CLN3-212ENST00000564574 AAK1Q2M2I8 961 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 ZC3H12AQ5D1E8 599 aaKnown RBP21.43■■□□□ 1.02
CLN3-212ENST00000564574 ACBD5Q5T8D3 534 aaPredicted RBP21.43■■□□□ 1.02
CLN3-212ENST00000564574 MTSS1LQ765P7 747 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 ATP6V0D2Q8N8Y2 350 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 TDRD5Q8NAT2 981 aaKnown RBP21.43■■□□□ 1.02
CLN3-212ENST00000564574 SH3RF2Q8TEC5 729 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.43■■□□□ 1.02
CLN3-212ENST00000564574 THEGQ9P2T0 379 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 USP18Q9UMW8 372 aa21.43■■□□□ 1.02
CLN3-212ENST00000564574 KIF26AQ9ULI4 1882 aaPredicted RBP21.43■■□□□ 1.02
CLN3-212ENST00000564574 E2F8A0AVK6 867 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 KCNU1A8MYU2 1149 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 SPOPO43791 374 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 KIF5CO60282 957 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 COMTP21964 271 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 MSNP26038 577 aaKnown RBP21.42■■□□□ 1.02
CLN3-212ENST00000564574 KCNQ1P51787 676 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 ATXN1P54253 815 aaKnown RBP21.42■■□□□ 1.02
CLN3-212ENST00000564574 ZXDBP98169 803 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 ZNF77Q15935 545 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 RAB6CQ53S08 254 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 SCYL2Q6P3W7 929 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 FAM131BQ86XD5 332 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 PLCD3Q8N3E9 789 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 ADAMTS19Q8TE59 1207 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 BTN2A3PQ96KV6 586 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms