RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 KLKB1P03952 638 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 GLI1P08151 1106 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 TDGF1P13385 188 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CYP11B1P15538 503 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CNR2P34972 360 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 SLC6A11P48066 632 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 POLR2FP61218 127 aaKnown RBP13.97□□□□□ -0.17
CLK3-216ENST00000564468 YWHAZP63104 245 aaKnown RBP13.97□□□□□ -0.17
CLK3-216ENST00000564468 TPM4P67936 248 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 RING1Q06587 406 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 NNTQ13423 1086 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 E2F5Q15329 346 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 FILIP1LQ4L180 1135 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 NUGGCQ68CJ6 796 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 GRAMD4Q6IC98 578 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 C12orf40Q86WS4 652 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 ZNF677Q86XU0 584 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 ZDHHC17Q8IUH5 632 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 PASD1Q8IV76 773 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 NAT16Q8N8M0 369 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 MSANTD4Q8NCY6 345 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CLEC4CQ8WTT0 213 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 ERGIC2Q96RQ1 377 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 IRX2Q9BZI1 471 aaPredicted RBP13.97□□□□□ -0.17
CLK3-216ENST00000564468 GANQ9H2C0 597 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 SYNCQ9H7C4 482 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 FAM207AQ9NSI2 230 aaPredicted RBP13.97□□□□□ -0.17
CLK3-216ENST00000564468 DNAJC17Q9NVM6 304 aaKnown RBP13.97□□□□□ -0.17
CLK3-216ENST00000564468 ASNSD1Q9NWL6 643 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 CYTH4Q9UIA0 394 aa13.97□□□□□ -0.17
CLK3-216ENST00000564468 EML5Q05BV3 1969 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 ACACBO00763 2458 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 K7ESF4 209 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 PAPSS1O43252 624 aaPredicted RBP13.96□□□□□ -0.17
CLK3-216ENST00000564468 LILRB5O75023 590 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 PNMA6AP0CW24 399 aaPredicted RBP13.96□□□□□ -0.17
CLK3-216ENST00000564468 STAT1P42224 750 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 SLC11A2P49281 568 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 DGKGP49619 791 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 TBX4P57082 545 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 KDSRQ06136 332 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 SYCP1Q15431 976 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 C2orf27AQ580R0 203 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 TOGARAM2Q6ZUX3 1019 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 TRMT11Q7Z4G4 463 aaKnown RBP13.96□□□□□ -0.17
CLK3-216ENST00000564468 LONP2Q86WA8 852 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 FAM217AQ8IXS0 508 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 WDTC1Q8N5D0 677 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 TERB1Q8NA31 727 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 C1orf131Q8NDD1 294 aaKnown RBP13.96□□□□□ -0.17
CLK3-216ENST00000564468 USP33Q8TEY7 942 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 EZH1Q92800 747 aaPredicted RBP13.96□□□□□ -0.17
CLK3-216ENST00000564468 AZIN2Q96A70 460 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 DDX50Q9BQ39 737 aaKnown RBP13.96□□□□□ -0.17
CLK3-216ENST00000564468 SIK3Q9Y2K2 1263 aa13.96□□□□□ -0.17
CLK3-216ENST00000564468 SYCE3A1L190 88 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 HSF2BPO75031 334 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 LSM8O95777 96 aaKnown RBP13.95□□□□□ -0.18
CLK3-216ENST00000564468 PENKP01210 267 aaPredicted RBP13.95□□□□□ -0.18
CLK3-216ENST00000564468 IGLV3-27P01718 113 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 CDH5P33151 784 aaPredicted RBP13.95□□□□□ -0.18
CLK3-216ENST00000564468 SOX5P35711 763 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 SEC13P55735 322 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 DMC1Q14565 340 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 RSPO4Q2I0M5 234 aaPredicted RBP13.95□□□□□ -0.18
CLK3-216ENST00000564468 MPPE1Q53F39 396 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 EOGTQ5NDL2 527 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 ADGRF1Q5T601 910 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 OR6B2Q6IFH4 312 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 PKN3Q6P5Z2 889 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 WDR5BQ86VZ2 330 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 DHX40Q8IX18 779 aaKnown RBP13.95□□□□□ -0.18
CLK3-216ENST00000564468 PHTF2Q8N3S3 785 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 DQX1Q8TE96 717 aaKnown RBP13.95□□□□□ -0.18
CLK3-216ENST00000564468 DDI1Q8WTU0 396 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 CPXM1Q96SM3 734 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 FUCA2Q9BTY2 467 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 SLC2A11Q9BYW1 496 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 HSD3B7Q9H2F3 369 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 NLRC4Q9NPP4 1024 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 TMEM51Q9NW97 253 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 NCDNQ9UBB6 729 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 STOML2Q9UJZ1 356 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 RAB23Q9ULC3 237 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 MMP17Q9ULZ9 603 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 NAALADL1Q9UQQ1 740 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 TLR6Q9Y2C9 796 aa13.95□□□□□ -0.18
CLK3-216ENST00000564468 TYW5A2RUC4 315 aaKnown RBP13.94□□□□□ -0.18
CLK3-216ENST00000564468 IRAK2O43187 625 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 MSI1O43347 362 aaKnown RBP13.94□□□□□ -0.18
CLK3-216ENST00000564468 GFPT2O94808 682 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 APBB3O95704 486 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 APOEP02649 317 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 FYNP06241 537 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 CCDC172P0C7W6 258 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 GBP1P32455 592 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 TIE1P35590 1138 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 FNTBP49356 437 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 KLK7P49862 253 aa13.94□□□□□ -0.18
CLK3-216ENST00000564468 CDK17Q00537 523 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms