RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ZNF445P59923 1031 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 CREB5Q02930 508 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 EXOC3L4Q17RC7 722 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 MPPE1Q53F39 396 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 FYB2Q5VWT5 728 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 EGFLAMQ63HQ2 1017 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 TRIM65Q6PJ69 517 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 TOGARAM2Q6ZUX3 1019 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 OLIG1Q8TAK6 271 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 UCMAQ8WVF2 138 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 NUP62CLQ9H1M0 184 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 THAP9Q9H5L6 903 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 ST7Q9NRC1 585 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 SLC27A6Q9Y2P4 619 aa17.59■□□□□ 0.41
CLK3-210ENST00000563112 GTPBP10A4D1E9 387 aaKnown RBP17.58■□□□□ 0.4
CLK3-210ENST00000563112 GFRA2O00451 464 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 LETM1O95202 739 aaPredicted RBP17.58■□□□□ 0.4
CLK3-210ENST00000563112 LATS1O95835 1130 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 SLC9A1P19634 815 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 USP8P40818 1118 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 P2RY2P41231 377 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 GPD2P43304 727 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 CCDC6Q16204 474 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 MEA1Q16626 185 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 ARHGAP44Q17R89 818 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 PMS2CLQ68D20 193 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 MSANTD2Q6P1R3 559 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 UNC45BQ8IWX7 931 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 FAM217AQ8IXS0 508 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 ABCA7Q8IZY2 2146 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 MED15Q96RN5 788 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 SLC2A11Q9BYW1 496 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 MIS12Q9H081 205 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 APEX2Q9UBZ4 518 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 HCN2Q9UL51 889 aa17.58■□□□□ 0.4
CLK3-210ENST00000563112 THADAQ6YHU6 1953 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 SLC30A4O14863 429 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 NPC1O15118 1278 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 THAP12O43422 761 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 CAVIN2O95810 425 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 ERCC5P28715 1186 aaPredicted RBP17.57■□□□□ 0.4
CLK3-210ENST00000563112 GNA15P30679 374 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 DHPSP49366 369 aaPredicted RBP17.57■□□□□ 0.4
CLK3-210ENST00000563112 SF3A2Q15428 464 aaKnown RBP17.57■□□□□ 0.4
CLK3-210ENST00000563112 PLA2G2CQ5R387 149 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 ADGRF1Q5T601 910 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 NUGGCQ68CJ6 796 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 LPCAT2Q7L5N7 544 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 IRF2BP1Q8IU81 584 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 STK32AQ8WU08 396 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 ZNF606Q8WXB4 792 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 RLN3Q8WXF3 142 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 ACOX2Q99424 681 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 TRIM62Q9BVG3 475 aa17.57■□□□□ 0.4
CLK3-210ENST00000563112 BCLAF3A2AJT9 711 aaKnown RBP17.56■□□□□ 0.4
CLK3-210ENST00000563112 MSI1O43347 362 aaKnown RBP17.56■□□□□ 0.4
CLK3-210ENST00000563112 TSPAN3O60637 253 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 GABBR2O75899 941 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 NCAM1P13591 858 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 BCKDHBP21953 392 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 TBX4P57082 545 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 STARD3Q14849 445 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 MAN2A1Q16706 1144 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 SMYD5Q6GMV2 418 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 DENND1BQ6P3S1 775 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 GJB7Q6PEY0 223 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 CYP2U1Q7Z449 544 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 ANKS1BQ7Z6G8 1248 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 SCUBE3Q8IX30 993 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 IPO4Q8TEX9 1081 aaKnown RBP17.56■□□□□ 0.4
CLK3-210ENST00000563112 CLEC4CQ8WTT0 213 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 FAM149B1Q96BN6 582 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 TMA16Q96EY4 203 aaKnown RBP17.56■□□□□ 0.4
CLK3-210ENST00000563112 GABRG3Q99928 467 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 CACNA2D2Q9NY47 1150 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 STOML2Q9UJZ1 356 aa17.56■□□□□ 0.4
CLK3-210ENST00000563112 A0A1W2PQF6 199 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 CAPN9O14815 690 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 TIMM44O43615 452 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 GDF9O60383 454 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 ZNF217O75362 1048 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 PRKCSHP14314 528 aaPredicted RBP17.55■□□□□ 0.4
CLK3-210ENST00000563112 GABRG2P18507 467 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 PON1P27169 355 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 RPL34P49207 117 aaKnown RBP17.55■□□□□ 0.4
CLK3-210ENST00000563112 SLC11A2P49281 568 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 ARID5AQ03989 594 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 RING1Q06587 406 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 EIF4HQ15056 248 aaKnown RBP17.55■□□□□ 0.4
CLK3-210ENST00000563112 GEN1Q17RS7 908 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 MAP7D1Q3KQU3 841 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 DPCR1Q3MIW9 517 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 CT47A1Q5JQC4 288 aaPredicted RBP17.55■□□□□ 0.4
CLK3-210ENST00000563112 IL31Q6EBC2 164 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 SLC36A4Q6YBV0 504 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 CLEC17AQ6ZS10 378 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 P2RY11Q96G91 374 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 PIWIL1Q96J94 861 aaKnown RBP17.55■□□□□ 0.4
CLK3-210ENST00000563112 SERPINB11Q96P15 392 aa17.55■□□□□ 0.4
CLK3-210ENST00000563112 DDX50Q9BQ39 737 aaKnown RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms