RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RFX8Q6ZV50 586 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 CYP4V2Q6ZWL3 525 aaPredicted RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 RTL10Q7L3V2 364 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 LINC00523Q86TU6 105 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 OSTM1Q86WC4 334 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 DDX42Q86XP3 938 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS39-204ENST00000561818 ZDHHC14Q8IZN3 488 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 NUP93Q8N1F7 819 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 ARFGAP1Q8N6T3 406 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 NAT8LQ8N9F0 302 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 SLC7A14Q8TBB6 771 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 PIK3R5Q8WYR1 880 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 PRCCQ92733 491 aaPredicted RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 CDKL2Q92772 493 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 KHSRPQ92945 711 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS39-204ENST00000561818 TLCD1Q96CP7 247 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 HDAC11Q96DB2 347 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 C1orf74Q96LT6 269 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 GDAP1L1Q96MZ0 367 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 SPATA13Q96N96 652 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 CYTH2Q99418 400 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 PKMYT1Q99640 499 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 SMOQ99835 787 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 TMEM121Q9BTD3 319 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 TLR8Q9NR97 1041 aaKnown RBP7.78□□□□□ -1.16
VPS39-204ENST00000561818 AAASQ9NRG9 546 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS39-204ENST00000561818 NKIRAS1Q9NYS0 192 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 BACE2Q9Y5Z0 518 aa7.78□□□□□ -1.16
VPS39-204ENST00000561818 TANC1Q9C0D5 1861 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 IQANK1A0A1B0GTG1 560 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 EXOC1LA0A1B0GW35 172 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 FAM92AA1XBS5 289 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 MAGEB16A2A368 324 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 MYBPHLA2RUH7 354 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 ENPP3O14638 875 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 KCNN4O15554 427 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 IRAK2O43187 625 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 GJB6O95452 261 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 C1RP00736 705 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 AMHP03971 560 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PECAM1P16284 738 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 PFKLP17858 780 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 LAG3P18627 525 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 FGFR3P22607 806 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 HOXC13P31276 330 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 GRIK1P39086 918 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 MDH1P40925 334 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 SERPINB9P50453 376 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 VASPP50552 380 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 TUBP50607 506 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 SLC5A3P53794 718 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 GEMIN4P57678 1058 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 YWHAGP61981 247 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS39-204ENST00000561818 IRX5P78411 483 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 RING1Q06587 406 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 GPR17Q13304 367 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 SEMA5AQ13591 1074 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 MRPL58Q14197 206 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 FRG1Q14331 258 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 VEPH1Q14D04 833 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PARP6Q2NL67 630 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 USP41Q3LFD5 358 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 CTXN3Q4LDR2 81 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 BSPRYQ5W0U4 402 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 KLHDC10Q6PID8 442 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 LRRC31Q6UY01 552 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PAQR9Q6ZVX9 377 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 CCDC117Q8IWD4 279 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 UNC45BQ8IWX7 931 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PALM2Q8IXS6 379 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 ANKS4BQ8N8V4 417 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 ATP6V0D2Q8N8Y2 350 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 STKLD1Q8NE28 680 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PCDH19Q8TAB3 1148 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 NSMCE1Q8WV22 266 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 HTR3CQ8WXA8 447 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 LPPQ93052 612 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 RNF34Q969K3 372 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 OLFM3Q96PB7 478 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PEBP4Q96S96 227 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 DDX50Q9BQ39 737 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 TTPALQ9BTX7 342 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 CRISPLD2Q9H0B8 497 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 RNF208Q9H0X6 261 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 NEUROG2Q9H2A3 272 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 CENPHQ9H3R5 247 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 CCDC134Q9H6E4 229 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 SAYSD1Q9NPB0 183 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 KLHL11Q9NVR0 708 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 ARHGEF38Q9NXL2 777 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 NSMCE4AQ9NXX6 385 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS39-204ENST00000561818 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 IGSF9Q9P2J2 1179 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 PSMC3IPQ9P2W1 217 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 UXTQ9UBK9 157 aaPredicted RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 TJP2Q9UDY2 1190 aa7.77□□□□□ -1.17
VPS39-204ENST00000561818 XPO7Q9UIA9 1087 aaKnown RBP7.77□□□□□ -1.17
VPS39-204ENST00000561818 ZNF180Q9UJW8 692 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms