RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 CCDC25Q86WR0 208 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 TMEM173Q86WV6 379 aaPredicted RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 CEP57Q86XR8 500 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 PPIL6Q8IXY8 311 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 NAT8LQ8N9F0 302 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 ADAM32Q8TC27 787 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 CPT1BQ92523 772 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 PRCCQ92733 491 aaPredicted RBP13.38□□□□□ -0.27
SNX1-211ENST00000560829 ATP6V1G3Q96LB4 118 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 OLFM3Q96PB7 478 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 C11orf49Q9H6J7 331 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 ANLNQ9NQW6 1124 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.38□□□□□ -0.27
SNX1-211ENST00000560829 DTLQ9NZJ0 730 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 COX16Q9P0S2 106 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 SCML2Q9UQR0 700 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 TTC3P53804 2025 aa13.38□□□□□ -0.27
SNX1-211ENST00000560829 NLRC5Q86WI3 1866 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 ABHD14A-ACY1A0A1B0GW23 586 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 FAM92AA1XBS5 289 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 AMPD1P23109 780 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 CTCFP49711 727 aaPredicted RBP13.37□□□□□ -0.27
SNX1-211ENST00000560829 GYS2P54840 703 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 IFFO1Q0D2I5 559 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 PAFAH1B3Q15102 231 aaKnown RBP13.37□□□□□ -0.27
SNX1-211ENST00000560829 SLC45A4Q5BKX6 768 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 AGBL2Q5U5Z8 902 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 C4orf22Q6V702 233 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 SCN4BQ8IWT1 228 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 RNF168Q8IYW5 571 aaPredicted RBP13.37□□□□□ -0.27
SNX1-211ENST00000560829 NUP93Q8N1F7 819 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 FAM76AQ8TAV0 307 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 SPPL2BQ8TCT7 592 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 C2orf15Q8WU43 125 aaKnown RBP13.37□□□□□ -0.27
SNX1-211ENST00000560829 BCL7CQ8WUZ0 217 aaPredicted RBP13.37□□□□□ -0.27
SNX1-211ENST00000560829 QKIQ96PU8 341 aaKnown RBP eCLIP13.37□□□□□ -0.276e-10■■□□□ 13.4
SNX1-211ENST00000560829 TTPALQ9BTX7 342 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 SMOC2Q9H3U7 446 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 FBXO44Q9H4M3 255 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 CWH43Q9H720 699 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 TMPRSS4Q9NRS4 437 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 ETNK2Q9NVF9 386 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 PSD3Q9NYI0 1048 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 PAK5Q9P286 719 aa13.37□□□□□ -0.27
SNX1-211ENST00000560829 MTMR11A4FU01 709 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 HACD1B0YJ81 288 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 NT5C1B-RDH14C9J2C7 533 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 IRAK2O43187 625 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 SHBGP04278 402 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 CAPN2P17655 700 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 RBL1P28749 1068 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 CBLBQ13191 982 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 UBAP2Q5T6F2 1119 aaKnown RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 BTBD8Q5XKL5 378 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 RFX8Q6ZV50 586 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 MON1AQ86VX9 555 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 TOP1MTQ969P6 601 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 B3GALT6Q96L58 329 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 PWWP2AQ96N64 755 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 RBM15Q96T37 977 aaKnown RBP eCLIP13.36□□□□□ -0.27
SNX1-211ENST00000560829 WDCPQ9H6R7 721 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 NINJ2Q9NZG7 142 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 EEF2KO00418 725 aaKnown RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 DCLK1O15075 740 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 KCNN4O15554 427 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 AMHP03971 560 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 PBX3P40426 434 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 ALDH7A1P49419 539 aaKnown RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 DDR2Q16832 855 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 LRRC26Q2I0M4 334 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 KRT71Q3SY84 523 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 BRMS1LQ5PSV4 323 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 SLC8B1Q6J4K2 584 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 KCNT2Q6UVM3 1135 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 RSPO2Q6UXX9 243 aaPredicted RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 ARHGAP18Q8N392 663 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 ATAD1Q8NBU5 361 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 ZNF689Q96CS4 500 aaPredicted RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 PGM2Q96G03 612 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 PAWRQ96IZ0 340 aaKnown RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 SPATA17Q96L03 361 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 ROPN1BQ9BZX4 212 aaPredicted RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 TKTL2Q9H0I9 626 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 OSBPL2Q9H1P3 480 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 ROPN1Q9HAT0 212 aaPredicted RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 RC3H2Q9HBD1 1191 aaKnown RBP13.36□□□□□ -0.27
SNX1-211ENST00000560829 COMMD8Q9NX08 183 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 ARHGEF38Q9NXL2 777 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 RAD54BQ9Y620 910 aa13.36□□□□□ -0.27
SNX1-211ENST00000560829 PATJQ8NI35 1801 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 FAM72CH0Y354 149 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 KIAA0355O15063 1070 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 ALOX15BO15296 676 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 EIF3HO15372 352 aaKnown RBP eCLIP13.35□□□□□ -0.27
SNX1-211ENST00000560829 CREB3O43889 395 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 GCATO75600 419 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 TCEA3O75764 348 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 ZNF189O75820 626 aaPredicted RBP13.35□□□□□ -0.27
SNX1-211ENST00000560829 VNN2O95498 520 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 TIMP1P01033 207 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms