RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 UPF3AQ9H1J1 476 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MAN1C1Q9NR34 630 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TLR9Q9NR96 1032 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 RSPH14Q9UHP6 348 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 COG5Q9UP83 839 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 YIPF1Q9Y548 306 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CPQQ9Y646 472 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC195A0A1B0GUA6 201 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 OR6C75A6NL08 312 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 NEDD8-MDP1E9PL57 170 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CNPP09543 421 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MMP8P22894 467 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 KCNQ1P51787 676 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PDE1BQ01064 536 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TAP1Q03518 808 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ZNF268Q14587 947 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MEA1Q16626 185 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PABPC1LQ4VXU2 614 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 RAB6CQ53S08 254 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 TXNRD3NBQ6F5E7 133 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 LCLAT1Q6UWP7 414 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC149Q6ZUS6 474 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 GPRIN1Q7Z2K8 1008 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MFN1Q8IWA4 741 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PDIK1LQ8N165 341 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MYRIPQ8NFW9 859 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 FCRL2Q96LA5 508 aaPredicted RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ACBD6Q9BR61 282 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 BBS2Q9BXC9 721 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 NFKBIZQ9BYH8 718 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 RAB6CQ9H0N0 254 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 ATP13A1Q9HD20 1204 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CHST7Q9NS84 486 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 HCFC1R1Q9NWW0 138 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 CDH22Q9UJ99 828 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 PCDHB8Q9UN66 801 aa5.64□□□□□ -1.51
VPS13C-209ENST00000560637 MKI67P46013 3256 aaKnown RBP5.64□□□□□ -1.51
VPS13C-209ENST00000560637 UBA6A0AVT1 1052 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 WDR91A4D1P6 747 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 HIDE1A8MVS5 230 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GRM6O15303 877 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RAD51CO43502 376 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 KCNE1P15382 129 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 EPCAMP16422 314 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TFE3P19532 575 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PMLP29590 882 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SERPINB6P35237 376 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ARHGAP25P42331 645 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PDIA2Q13087 525 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SLMAPQ14BN4 828 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CES3Q6UWW8 571 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RAPH1Q70E73 1250 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SLC13A5Q86YT5 568 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 BLOC1S5Q8TDH9 187 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 DQX1Q8TE96 717 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PYROXD1Q8WU10 500 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SNX19Q92543 992 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ALG3Q92685 438 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SUSD3Q96L08 255 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PPP1R10Q96QC0 940 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TGS1Q96RS0 853 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 FMO2Q99518 471 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 LGMNQ99538 433 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SMOQ99835 787 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TLR10Q9BXR5 811 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 KLC2Q9H0B6 622 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC68Q9H2F9 335 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 NDRG2Q9UN36 371 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 MTMR11A4FU01 709 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GOLGA8KD6RF30 607 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GOLGA8TH3BQL2 631 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GPR37O15354 613 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TBL1XO60907 577 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ZNF623O75123 536 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 FBXO21O94952 628 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 NOS2P35228 1153 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 IRS1P35568 1242 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PRKCIP41743 596 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SLC1A1P43005 524 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GPD2P43304 727 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RPS24P62847 133 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 COG7P83436 770 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CENPCQ03188 943 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC38Q502W7 563 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ATAT1Q5SQI0 421 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ERMARDQ5T6L9 678 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SPOCD1Q6ZMY3 1216 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TAC4Q86UU9 113 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RCOR2Q8IZ40 523 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PPM1NQ8N819 430 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TIFAQ96CG3 184 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 HSFY1Q96LI6 401 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SERPINB11Q96P15 392 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 BRD9Q9H8M2 597 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ABCB6Q9NP58 842 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 DYRK4Q9NR20 520 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ABCC13Q9NSE7 274 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 DDX56Q9NY93 547 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 DMGDHQ9UI17 866 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms