RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GOLGA6L6A8MZA4 724 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 M0QYT0 321 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 LCA5LO95447 670 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 CYP1A2P05177 515 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 PDGFRAP16234 1089 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 GPD1P21695 349 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 EML3Q32P44 896 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 SLC25A52Q3SY17 297 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 ARHGAP29Q52LW3 1261 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 ZC3H12AQ5D1E8 599 aaKnown RBP22.67■■□□□ 1.22
SNX1-210ENST00000560260 SH3PXD2AQ5TCZ1 1133 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 SLC2A4RGQ9NR83 387 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 DUS2Q9NX74 493 aaKnown RBP22.67■■□□□ 1.22
SNX1-210ENST00000560260 AGO1Q9UL18 857 aaKnown RBP22.67■■□□□ 1.22
SNX1-210ENST00000560260 STAP1Q9ULZ2 295 aa22.67■■□□□ 1.22
SNX1-210ENST00000560260 REXO2Q9Y3B8 237 aaKnown RBP22.67■■□□□ 1.22
SNX1-210ENST00000560260 OTOL1A6NHN0 477 aaPredicted RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 CCP110O43303 1012 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 H2AFZP0C0S5 128 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 PTPN9P43378 593 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 IFNAR2P48551 515 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 ATP11AP98196 1134 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 RING1Q06587 406 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 NME3Q13232 169 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 CC2D1AQ6P1N0 951 aaPredicted RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 H2AFVQ71UI9 128 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 KIAA1958Q8N8K9 716 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 PGAP3Q96FM1 320 aaPredicted RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 P2RY11Q96G91 374 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 PDLIM2Q96JY6 352 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 COL25A1Q9BXS0 654 aaPredicted RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 EBF3Q9H4W6 596 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 THG1LQ9NWX6 298 aaKnown RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 RRN3Q9NYV6 651 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 XPO7Q9UIA9 1087 aaKnown RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 LSM7Q9UK45 103 aaKnown RBP22.66■■□□□ 1.22
SNX1-210ENST00000560260 BDP1A6H8Y1 2624 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 NCOR1O75376 2440 aa22.66■■□□□ 1.22
SNX1-210ENST00000560260 TMEM191CA6NGB0 347 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 EIF3CLB5ME19 914 aaKnown RBP22.65■■□□□ 1.22
SNX1-210ENST00000560260 NDUFA10O95299 355 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 TMEM253P0C7T8 217 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 CYLC1P35663 651 aaPredicted RBP22.65■■□□□ 1.22
SNX1-210ENST00000560260 KPNA1P52294 538 aaPredicted RBP22.65■■□□□ 1.22
SNX1-210ENST00000560260 CDO1Q16878 200 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 DCUN1D2Q6PH85 259 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 DENND1CQ8IV53 801 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 EIF3CQ99613 913 aaKnown RBP22.65■■□□□ 1.22
SNX1-210ENST00000560260 ANLNQ9NQW6 1124 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 GTSE1Q9NYZ3 720 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 EPN1Q9Y6I3 576 aaPredicted RBP22.65■■□□□ 1.22
SNX1-210ENST00000560260 SCINQ9Y6U3 715 aa22.65■■□□□ 1.22
SNX1-210ENST00000560260 I6L893 689 aaPredicted RBP22.64■■□□□ 1.22
SNX1-210ENST00000560260 ENDOD1O94919 500 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 SDC4P31431 198 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 ZNF143P52747 638 aaPredicted RBP22.64■■□□□ 1.22
SNX1-210ENST00000560260 PDGFRLQ15198 375 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 NADSYN1Q6IA69 706 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 ACRBPQ8NEB7 543 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 TTC8Q8TAM2 541 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 CENPIQ92674 756 aaPredicted RBP22.64■■□□□ 1.22
SNX1-210ENST00000560260 IRF7Q92985 503 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 CHFRQ96EP1 664 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 NUP85Q9BW27 656 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 DCLK3Q9C098 648 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 TFR2Q9UP52 801 aa22.64■■□□□ 1.22
SNX1-210ENST00000560260 MOCS2O96007 188 aaPredicted RBP22.63■■□□□ 1.21
SNX1-210ENST00000560260 CYP17A1P05093 508 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 RDXP35241 583 aaKnown RBP22.63■■□□□ 1.21
SNX1-210ENST00000560260 CXCR3P49682 368 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 VCPP55072 806 aaKnown RBP22.63■■□□□ 1.21
SNX1-210ENST00000560260 HDAC4P56524 1084 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 ZXDAP98168 799 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 DEUP1Q05D60 604 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 NUGGCQ68CJ6 796 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 FAM217AQ8IXS0 508 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 FAM172AQ8WUF8 416 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 CTNNBL1Q8WYA6 563 aaPredicted RBP22.63■■□□□ 1.21
SNX1-210ENST00000560260 DNASE1L2Q92874 299 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 BTBD6Q96KE9 485 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 TRPV5Q9NQA5 729 aa22.63■■□□□ 1.21
SNX1-210ENST00000560260 GOLGA6L7A0A1B0GV03 622 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 KCNU1A8MYU2 1149 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 DCXO43602 365 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 GBP1P32455 592 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 MAGEA1P43355 309 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 SOX9P48436 509 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 HARS2P49590 506 aaKnown RBP22.62■■□□□ 1.21
SNX1-210ENST00000560260 CCZ1BP86790 482 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 CCZ1P86791 482 aaPredicted RBP22.62■■□□□ 1.21
SNX1-210ENST00000560260 RUNX3Q13761 415 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 PPP2R5DQ14738 602 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 GAB4Q2WGN9 574 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 STRADAQ7RTN6 431 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 FAM131BQ86XD5 332 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 UBALD2Q8IYN6 164 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 ADGRG2Q8IZP9 1017 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 MYEOVQ96EZ4 313 aa22.62■■□□□ 1.21
SNX1-210ENST00000560260 MRPL47Q9HD33 250 aaKnown RBP22.62■■□□□ 1.21
SNX1-210ENST00000560260 TMPRSS4Q9NRS4 437 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms