RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CHSY1Q86X52 802 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 MYLK4Q86YV6 388 aaPredicted RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 ARHGAP24Q8N264 748 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 PYROXD2Q8N2H3 581 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.75□□□□□ -0.37
LDLR-205ENST00000557933 ELOVL4Q9GZR5 314 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 PORCNQ9H237 461 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 DOCK1Q14185 1865 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 HNRNPRO43390 633 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 BUD23O43709 281 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 PRPSAP2O60256 369 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 SIN3BO75182 1162 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 C1QAP02745 245 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 OATP04181 439 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 ERVK-10P10266 1014 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 STIP1P31948 543 aaKnown RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 CPOXP36551 454 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 MLH1P40692 756 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 CLDN10P78369 228 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 KRT72Q14CN4 511 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 DUOXA2Q1HG44 320 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 XKR3Q5GH77 459 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 EFHC1Q5JVL4 640 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 DHDDSQ86SQ9 333 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 PLD5Q8N7P1 536 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 CNBD2Q96M20 576 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 TIPINQ9BVW5 301 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 CXCL16Q9H2A7 254 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 WDR55Q9H6Y2 383 aaPredicted RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 USP29Q9HBJ7 922 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 KCNK4Q9NYG8 393 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 PPP1R1BQ9UD71 204 aaPredicted RBP12.75□□□□□ -0.37
LDLR-205ENST00000557933 SOX13Q9UN79 622 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 FIS1Q9Y3D6 152 aa12.75□□□□□ -0.37
LDLR-205ENST00000557933 ADCY3O60266 1144 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 BPGMP07738 259 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 SUPT20HL2P0C7V6 817 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 MED21Q13503 144 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 LY6KQ17RY6 165 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 SUPT20HL1Q3ZLR7 823 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 NBPF12Q5TAG4 269 aaPredicted RBP12.74□□□□□ -0.37
LDLR-205ENST00000557933 LRRC38Q5VT99 294 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 MAP1SQ66K74 1059 aaPredicted RBP12.74□□□□□ -0.37
LDLR-205ENST00000557933 ANKRD27Q96NW4 1050 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 LGMNQ99538 433 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 GRIP2Q9C0E4 1043 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 XYLT2Q9H1B5 865 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 MINDY3Q9H8M7 445 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 SPDYE16A6NNV3 312 aaPredicted RBP12.74□□□□□ -0.37
LDLR-205ENST00000557933 APOEP02649 317 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 CLCN3P51790 818 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 MRPS22P82650 360 aaKnown RBP12.74□□□□□ -0.37
LDLR-205ENST00000557933 TMEM132BQ14DG7 1078 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 ATG16L1Q676U5 607 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 FAM183BPQ6ZVS7 135 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 NIPA1Q7RTP0 329 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 ZBTB46Q86UZ6 589 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 PCDH19Q8TAB3 1148 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 MPP4Q96JB8 637 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 APOL2Q9BQE5 337 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 DHX35Q9H5Z1 703 aaKnown RBP12.74□□□□□ -0.37
LDLR-205ENST00000557933 S100A14Q9HCY8 104 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 INPP5FQ9Y2H2 1132 aa12.74□□□□□ -0.37
LDLR-205ENST00000557933 WDR46O15213 610 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 SLC1A6P48664 564 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 NUMBP49757 651 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 RAP1GDS1P52306 607 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 RABGGTBP53611 331 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 SLC10A2Q12908 348 aaPredicted RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 NOMO1Q15155 1222 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 TRMT5Q32P41 509 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 SPDYAQ5MJ70 313 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 BRSK2Q8IWQ3 736 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 SPATA6LQ8N4H0 392 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 C7orf31Q8N865 590 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 PNPLA1Q8N8W4 532 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 NSUN6Q8TEA1 469 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 LIN28AQ9H9Z2 209 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 PREBQ9HCU5 417 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 APOBEC2Q9Y235 224 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 ADGRA2Q96PE1 1338 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 ALDOAP04075 364 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 VCLP18206 1134 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 CYP3A5P20815 502 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 RPL10P27635 214 aaKnown RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 GMPSP49915 693 aaPredicted RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 COPAP53621 1224 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 TMEM198Q66K66 360 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 CYP4V2Q6ZWL3 525 aaPredicted RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 ARHGAP22Q7Z5H3 698 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 NET1Q7Z628 596 aaPredicted RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 SPATA24Q86W54 205 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 SLC4A11Q8NBS3 891 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 ZSCAN18Q8TBC5 510 aaPredicted RBP12.73□□□□□ -0.37
LDLR-205ENST00000557933 FAM172AQ8WUF8 416 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 TMEM174Q8WUU8 243 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 CPB2Q96IY4 423 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 C17orf75Q9HAS0 396 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 TMEM216Q9P0N5 145 aa12.73□□□□□ -0.37
LDLR-205ENST00000557933 EMCNQ9ULC0 261 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms