RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CASQ2O14958 399 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 FARP2O94887 1054 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 KRT19P08727 400 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 C6orf222P0C671 652 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 TGFB3P10600 412 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 RAP1GAPP47736 663 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 SLC1A6P48664 564 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 UBAP2LQ14157 1087 aaKnown RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 SLC5A9Q2M3M2 681 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 CNPY1Q3B7I2 92 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 MDH1BQ5I0G3 518 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 MROH9Q5TGP6 573 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 LCLAT1Q6UWP7 414 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 HACE1Q8IYU2 909 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 RNF149Q8NC42 400 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 SEPT1Q8WYJ6 367 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 NAT9Q9BTE0 207 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 FZD8Q9H461 694 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 QTRT2Q9H974 415 aaKnown RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 SIX4Q9UIU6 781 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 TNFSF13BQ9Y275 285 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 DNAJC16Q9Y2G8 782 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 MAD1L1Q9Y6D9 718 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 LOC285556D6RIA3 1793 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 COL11A1P12107 1806 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 AP1G1O43747 822 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 AP1G2O75843 785 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 SETSIPP0DME0 302 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 UBA1P22314 1058 aaKnown RBP16.8■□□□□ 0.28
SHMT2-231ENST00000557433 FDFT1P37268 417 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 DEUP1Q05D60 604 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 KYAT1Q16773 422 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 FSCBQ5H9T9 825 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 OR6B2Q6IFH4 312 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 POTEAQ6S8J7 498 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF534Q76KX8 674 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 GSTCDQ8NEC7 633 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 PCDH19Q8TAB3 1148 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 EBF4Q9BQW3 602 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 C20orf27Q9GZN8 174 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 HOXC10Q9NYD6 342 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 MORF4L1Q9UBU8 362 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 HEY1Q9Y5J3 304 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 UGT1A9O60656 530 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 PLIN3O60664 434 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 SIN3BO75182 1162 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 STAU1O95793 577 aaKnown RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 ITGBL1O95965 494 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 ZCCHC18P0CG32 403 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 FGF3P11487 239 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 TNFAIP2Q03169 654 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 INCA1Q0VD86 236 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 KCNK16Q96T55 309 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 APOL6Q9BWW8 343 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 SMYD3Q9H7B4 428 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 UGT1A7Q9HAW7 530 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 UGT1A10Q9HAW8 530 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 UGT1A8Q9HAW9 530 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 GBA2Q9HCG7 927 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 EIF2B3Q9NR50 452 aaKnown RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 PICK1Q9NRD5 415 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF277Q9NRM2 450 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF112Q9UJU3 913 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 BARX2Q9UMQ3 279 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-231ENST00000557433 BRWD3Q6RI45 1802 aa16.79■□□□□ 0.28
SHMT2-231ENST00000557433 COL4A5P29400 1685 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF189O75820 626 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 GSRP00390 522 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 SRGAP2CP0DJJ0 459 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 SDC4P31431 198 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 CDH8P55286 799 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 PDE1BQ01064 536 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 ITGA9Q13797 1035 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 CCDC14Q49A88 953 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 METTL21CQ5VZV1 264 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 TRMT10BQ6PF06 316 aaKnown RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 CATSPERGQ6ZRH7 1159 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 FAM183BPQ6ZVS7 135 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 RAPH1Q70E73 1250 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 ZDHHC17Q8IUH5 632 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 TMEM126BQ8IUX1 230 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 C1orf127Q8N9H9 656 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 HEXIM2Q96MH2 286 aaKnown RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 QKIQ96PU8 341 aaKnown RBP eCLIP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 TWNKQ96RR1 684 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 LBHD1Q9BQE6 289 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 EBF3Q9H4W6 596 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 ASB7Q9H672 318 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF395Q9H8N7 513 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 HACD1B0YJ81 288 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 RNASEH1O60930 286 aaKnown RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 HARS2P49590 506 aaKnown RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 HIRAP54198 1017 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF280AP59817 542 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 NIPAL4Q0D2K0 466 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 N4BP2L1Q5TBK1 243 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-231ENST00000557433 FAXCQ5TGI0 409 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 TRNP1Q6NT89 227 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 METTL7BQ6UX53 244 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 PPP1R1BQ9UD71 204 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms