RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 SYT5O00445 386 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 TNFRSF6BO95407 300 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 MATN1P21941 496 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 KLRK1P26718 216 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 CERS1P27544 350 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 DUSP1P28562 367 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 MPGP29372 298 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 IGHMBP2P38935 993 aaKnown RBP5.29□□□□□ -1.56
SCFD1-221ENST00000556534 ALDH18A1P54886 795 aaKnown RBP5.29□□□□□ -1.56
SCFD1-221ENST00000556534 SRSF4Q08170 494 aaKnown RBP5.29□□□□□ -1.56
SCFD1-221ENST00000556534 CSHL1Q14406 222 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 C16orf89Q6UX73 402 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 ZNF813Q6ZN06 617 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 GATAD2AQ86YP4 633 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 GALNT16Q8N428 558 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 OR52L2PQ8NGH6 319 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 VOPP1Q96AW1 172 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 SH2D3AQ9BRG2 576 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 ADGRE3Q9BY15 652 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 CDCP1Q9H5V8 836 aa5.29□□□□□ -1.56
SCFD1-221ENST00000556534 F5H423 210 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 PPP6CO00743 305 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 SKAP2O75563 359 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 MMP8P22894 467 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 NDUFS1P28331 727 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 PTK2BQ14289 1009 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 PUM3Q15397 648 aaKnown RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 PFKFB4Q16877 469 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 P3H1Q32P28 736 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 ZACNQ401N2 412 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 LIN54Q6MZP7 749 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 PGBD2Q6P3X8 592 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 ACSM6Q6P461 480 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 RANBP10Q6VN20 620 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 NEK8Q86SG6 692 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 SLC22A17Q8WUG5 538 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 GLMPQ8WWB7 406 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 NPIPB3Q92617 1050 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 MCRS1Q96EZ8 462 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 RPS6KC1Q96S38 1066 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 EIF3CQ99613 913 aaKnown RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 KLHL13Q9P2N7 655 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 VPS4AQ9UN37 437 aa5.28□□□□□ -1.56
SCFD1-221ENST00000556534 SCAF8Q9UPN6 1271 aaKnown RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 UBE2J1Q9Y385 318 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-221ENST00000556534 LOC105369274A0A096LPK9 316 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 LOC102723532A0A0G2JNH3 316 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 C16orf96A6NNT2 1141 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 ACKR2O00590 384 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 PRYO14603 147 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 RPP40O75818 363 aaKnown RBP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 CER1O95813 267 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 SFPQP23246 707 aaKnown RBP eCLIP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 ICA1Q05084 483 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 GAB1Q13480 694 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 ZNF268Q14587 947 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 KPNB1Q14974 876 aaKnown RBP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 ELF2Q15723 593 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 TUBB8Q3ZCM7 444 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 SUPT20HL1Q3ZLR7 823 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 CC2D1BQ5T0F9 858 aaKnown RBP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 KIAA1614Q5VZ46 1190 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 GGT6Q6P531 493 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 KRT27Q7Z3Y8 459 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 YTHDF3Q7Z739 585 aaKnown RBP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 TRABD2AQ86V40 505 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 TTC30AQ86WT1 665 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 OR4N4Q8N0Y3 316 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 OR1N1Q8NGS0 311 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 AKAP1Q92667 903 aaKnown RBP eCLIP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 EID2BQ96D98 161 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 RMDN3Q96TC7 470 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 KATNAL1Q9BW62 490 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 QTRT1Q9BXR0 403 aaKnown RBP5.27□□□□□ -1.57
SCFD1-221ENST00000556534 FBXO28Q9NVF7 368 aa5.27□□□□□ -1.57
SCFD1-221ENST00000556534 WDR17Q8IZU2 1322 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 SMIM35A0A1B0GVV1 85 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 TRIM38O00635 465 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 RRHO14718 337 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 DNPH1O43598 174 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 BCAR3O75815 825 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 RNF8O76064 485 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 AKT1P31749 480 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 SERPINF1P36955 418 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 CHAF1AQ13111 956 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 KRT72Q14CN4 511 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 EZH2Q15910 746 aaKnown RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 CNGA3Q16281 694 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 MEX3CQ5U5Q3 659 aaKnown RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 KYAT3Q6YP21 454 aaKnown RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 TFAP2DQ7Z6R9 452 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 MYLK4Q86YV6 388 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 NRSN1Q8IZ57 195 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 CACNA2D3Q8IZS8 1091 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 OSR1Q8TAX0 266 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 MAP4K1Q92918 833 aa5.26□□□□□ -1.57
SCFD1-221ENST00000556534 SIRT4Q9Y6E7 314 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-221ENST00000556534 FAM90A18PA6NE21 464 aa5.25□□□□□ -1.57
SCFD1-221ENST00000556534 FAM90A16PA6NEW6 464 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms