RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CBWD2Q8IUF1 395 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 TRIML1Q8N9V2 468 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 LINC00301Q8NCQ3 95 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 GLIS3Q8NEA6 775 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 CEP76Q8TAP6 659 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 MYCBPAPQ8TBZ2 947 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 ZNF507Q8TCN5 953 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 MYLPFQ96A32 169 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 C8orf48Q96LL4 319 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 SYT15Q9BQS2 421 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 IL21RQ9HBE5 538 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 HSPBP1Q9NZL4 362 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 ACACAQ13085 2346 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 UBE4BO95155 1302 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 ATP2C2O75185 946 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 C1QL1O75973 258 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 TNNC2P02585 160 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 CENPBP07199 599 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 EIF2DP41214 584 aaKnown RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 PTGIRP43119 386 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 KIR2DL1P43626 348 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 PSMC1P62191 440 aaKnown RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 IFRD2Q12894 506 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 SNRNP35Q16560 246 aaKnown RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 EOGTQ5NDL2 527 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 RHBDF2Q6PJF5 856 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 TRAPPC11Q7Z392 1133 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 MIB1Q86YT6 1006 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 C12orf56Q8IXR9 622 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 PIP4K2CQ8TBX8 421 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 SETD7Q8WTS6 366 aaKnown RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 TMEM174Q8WUU8 243 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 PCED1BQ96HM7 432 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 RNF38Q9H0F5 515 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 PCIF1Q9H4Z3 704 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 MAGEF1Q9HAY2 307 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 PRDM16Q9HAZ2 1276 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 SRA1Q9HD15 236 aaKnown RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 AGPAT3Q9NRZ7 376 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 CFAP97Q9P2B7 532 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 MAGEC2Q9UBF1 373 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 R3HCC1Q9Y3T6 440 aaKnown RBP10.62□□□□□ -0.71
SCFD1-220ENST00000556486 RAD54BQ9Y620 910 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 CPQQ9Y646 472 aa10.62□□□□□ -0.71
SCFD1-220ENST00000556486 MAST4O15021 2626 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 A0A0A0MRY4 1105 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 IGHV1OR15-9A0A0B4J2B8 117 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 ZNF840PA6NDX5 716 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 MEN1O00255 615 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 TGFB1I1O43294 461 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 STX6O43752 255 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 GJB3O75712 270 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 YEATS4O95619 227 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 OAS1P00973 400 aaKnown RBP10.61□□□□□ -0.71
SCFD1-220ENST00000556486 SYPP08247 313 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 BDNFP23560 247 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 AMPD3Q01432 767 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 CEBPZQ03701 1054 aaKnown RBP10.61□□□□□ -0.71
SCFD1-220ENST00000556486 GRIK2Q13002 908 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 CBLBQ13191 982 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 BYSLQ13895 437 aaKnown RBP10.61□□□□□ -0.71
SCFD1-220ENST00000556486 PSMD6Q15008 389 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 BMT2Q1RMZ1 405 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 HSF5Q4G112 596 aaPredicted RBP10.61□□□□□ -0.71
SCFD1-220ENST00000556486 PKDCCQ504Y2 493 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 TOGARAM2Q6ZUX3 1019 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 HS2ST1Q7LGA3 356 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 ADGRG2Q8IZP9 1017 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 ZNF513Q8N8E2 541 aaPredicted RBP10.61□□□□□ -0.71
SCFD1-220ENST00000556486 ACOX2Q99424 681 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 C7orf25Q9BPX7 421 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 PANK2Q9BZ23 570 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 ELOVL4Q9GZR5 314 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 XYLT2Q9H1B5 865 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 TRPM5Q9NZQ8 1165 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 CGNQ9P2M7 1197 aaKnown RBP10.61□□□□□ -0.71
SCFD1-220ENST00000556486 HCN2Q9UL51 889 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 NME7Q9Y5B8 376 aa10.61□□□□□ -0.71
SCFD1-220ENST00000556486 TBC1D3BA6NDS4 549 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 SLC9A3R1O14745 358 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 SPTLC2O15270 562 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 CST3P01034 146 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 ATXN1LP0C7T5 689 aaKnown RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 ADH5P11766 374 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 HOXB2P14652 356 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 ATICP31939 592 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 HOXD12P35452 270 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 GNL1P36915 607 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 GRIA2P42262 883 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 CYP24A1Q07973 514 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 C19orf57Q0VDD7 668 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 FAM26FQ5R3K3 315 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 LY6G5CQ5SRR4 150 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 C10orf76Q5T2E6 689 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 PDILTQ8N807 584 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 IQUBQ8NA54 791 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 NOC3LQ8WTT2 800 aaKnown RBP10.6□□□□□ -0.71
SCFD1-220ENST00000556486 SCFD1Q8WVM8 642 aa10.6□□□□□ -0.71
SCFD1-220ENST00000556486 OVCA2Q8WZ82 227 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms