RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TIE1P35590 1138 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 PXNP49023 591 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 KCNJ12Q14500 433 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 EIF4HQ15056 248 aaKnown RBP16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 CSRP2Q16527 193 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 MPP7Q5T2T1 576 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 ADGRF1Q5T601 910 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 EMC10Q5UCC4 262 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 CDKAL1Q5VV42 579 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 NUGGCQ68CJ6 796 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 CREBRFQ8IUR6 639 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 UNC45BQ8IWX7 931 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 KIAA2013Q8IYS2 634 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 FAM71AQ8IYT1 594 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 CCDC33Q8N5R6 958 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 MDGA1Q8NFP4 955 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 GABRG3Q99928 467 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 CD248Q9HCU0 757 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 POLMQ9NP87 494 aaPredicted RBP16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 NFE2L3Q9Y4A8 694 aa16.74■□□□□ 0.27
CCDC88C-209ENST00000554872 ANTXRLA6NF34 631 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PRR5-ARHGAP8B1AHC4 643 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PRRT4C9JH25 899 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 TRIM24O15164 1050 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 IRAK2O43187 625 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 CALCAP01258 141 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 GLI1P08151 1106 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 HMBSP08397 361 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 ARHGAP8P85298 464 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 APBA1Q02410 837 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PDCLQ13371 301 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 ENPP2Q13822 863 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 ARHGAP44Q17R89 818 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PLK5Q496M5 336 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 MPPE1Q53F39 396 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 USP39Q53GS9 565 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 TOGARAM2Q6ZUX3 1019 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 KBTBD6Q86V97 674 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 CLEC4CQ8WTT0 213 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PIWIL1Q96J94 861 aaKnown RBP16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 SERPINB11Q96P15 392 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PARD6AQ9NPB6 346 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 ASNSD1Q9NWL6 643 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 DLL3Q9NYJ7 618 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 SFMBT1Q9UHJ3 866 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 CYTH4Q9UIA0 394 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 DNAJC12Q9UKB3 198 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 TLR6Q9Y2C9 796 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 DAAM1Q9Y4D1 1078 aa16.73■□□□□ 0.27
CCDC88C-209ENST00000554872 PAPSS1O43252 624 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 IGLV3-25P01717 112 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 HOXD9P28356 352 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 BPIFB4P59827 614 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 PTK2Q05397 1052 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 KCNMA1Q12791 1236 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 LPAL2Q16609 132 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 ANO7Q6IWH7 933 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 SCUBE3Q8IX30 993 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 ZNF557Q8N988 423 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 DQX1Q8TE96 717 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 SLC39A13Q96H72 371 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 NAA15Q9BXJ9 866 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 DUSP15Q9H1R2 295 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 PLCB1Q9NQ66 1216 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 ST7Q9NRC1 585 aa16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 SAMSN1Q9NSI8 373 aaKnown RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 AJAP1Q9UKB5 411 aaPredicted RBP16.72■□□□□ 0.27
CCDC88C-209ENST00000554872 A0A1W2PQF6 199 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 E5RJQ4 531 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 MSI1O43347 362 aaKnown RBP16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 RHOBTB1O94844 696 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 C7P10643 843 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 CLCN1P35523 988 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 P2RY2P41231 377 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 ID4P47928 161 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 SLC11A2P49281 568 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 EIF4EBP2Q13542 120 aaPredicted RBP16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 BYSLQ13895 437 aaKnown RBP16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 ELF2Q15723 593 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 SPDYCQ5MJ68 293 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 PLA2G2CQ5R387 149 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 KLHDC7AQ5VTJ3 777 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 EGFLAMQ63HQ2 1017 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 PMS2CLQ68D20 193 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 ERMP1Q7Z2K6 904 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 ANKS1BQ7Z6G8 1248 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 MIS12Q9H081 205 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 POPDC2Q9HBU9 364 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 ACP6Q9NPH0 428 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 SEMA4GQ9NTN9 838 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 ANO10Q9NW15 660 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 PLK2Q9NYY3 685 aa16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 MYO18AQ92614 2054 aaKnown RBP16.71■□□□□ 0.27
CCDC88C-209ENST00000554872 FOXN3O00409 490 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 PIK3R2O00459 728 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 TIMM44O43615 452 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 NCAM1P13591 858 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 HOXB2P14652 356 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 UCHL3P15374 230 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms