RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ENDOD1O94919 500 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 F9P00740 461 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 IGLV3-27P01718 113 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 CCDC175P0C221 793 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 DESP17661 470 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 RDXP35241 583 aaKnown RBP12.74□□□□□ -0.37
SHMT2-209ENST00000553949 DEUP1Q05D60 604 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 RING1Q06587 406 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 USP4Q13107 963 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 CDO1Q16878 200 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 ZC3H12AQ5D1E8 599 aaKnown RBP12.74□□□□□ -0.37
SHMT2-209ENST00000553949 SH3PXD2AQ5TCZ1 1133 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 VITQ6UXI7 678 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 STRADAQ7RTN6 431 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 BPIFB1Q8TDL5 484 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 FAM172AQ8WUF8 416 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 WBP2Q969T9 261 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 BTBD6Q96KE9 485 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 FCRL2Q96LA5 508 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-209ENST00000553949 RPP25Q9BUL9 199 aaKnown RBP12.74□□□□□ -0.37
SHMT2-209ENST00000553949 PLA2G2FQ9BZM2 168 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 LACRTQ9GZZ8 138 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 PIGVQ9NUD9 493 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 TMEM51Q9NW97 253 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 IP6K2Q9UHH9 426 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 SH3BP1Q9Y3L3 701 aa12.74□□□□□ -0.37
SHMT2-209ENST00000553949 A0A0U1RQJ8 604 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 E2F8A0AVK6 867 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 C19orf67A6NJJ6 358 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 BTNL10A8MVZ5 291 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 SCAMP3O14828 347 aaKnown RBP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 GREM1O60565 184 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 KLKB1P03952 638 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 CCR1P32246 355 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 NOP2P46087 812 aaKnown RBP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 HARS2P49590 506 aaKnown RBP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 CXCR3P49682 368 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 ATXN1P54253 815 aaKnown RBP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 HDAC4P56524 1084 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 KIF5AQ12840 1032 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 PIGHQ14442 188 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 RAB6CQ53S08 254 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 NUGGCQ68CJ6 796 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 SND1Q7KZF4 910 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 MFSD6LQ8IWD5 586 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 KIAA1958Q8N8K9 716 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 DEPDC1BQ8WUY9 529 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 ATRIPQ8WXE1 791 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 RSAD2Q8WXG1 361 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 RNF34Q969K3 372 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 NXPE3Q969Y0 559 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 DCLK3Q9C098 648 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 RAB6CQ9H0N0 254 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 KCNK12Q9HB15 430 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 IGSF9Q9P2J2 1179 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 LCMT1Q9UIC8 334 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 SALL4Q9UJQ4 1053 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 LSM7Q9UK45 103 aaKnown RBP12.73□□□□□ -0.37
SHMT2-209ENST00000553949 DUSP10Q9Y6W6 482 aa12.73□□□□□ -0.37
SHMT2-209ENST00000553949 ANAPC1Q9H1A4 1944 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 KCNU1A8MYU2 1149 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 PROSCO94903 275 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 APOEP02649 317 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 ASGR2P07307 311 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 SLC2A3P11169 496 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 PSMC3P17980 439 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 CORO1AP31146 461 aaKnown RBP12.72□□□□□ -0.37
SHMT2-209ENST00000553949 HADHBP55084 474 aaKnown RBP12.72□□□□□ -0.37
SHMT2-209ENST00000553949 FCHO2Q0JRZ9 810 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 GRM2Q14416 872 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 PPP2R5DQ14738 602 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 ACAP1Q15027 740 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 CC2D1AQ6P1N0 951 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-209ENST00000553949 Q6ZNB5 142 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 HTR3DQ70Z44 454 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 FAM131BQ86XD5 332 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 DENND1CQ8IV53 801 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 UNC45BQ8IWX7 931 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 YAF2Q8IY57 180 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 ARFGAP1Q8N6T3 406 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 NIPA2Q8N8Q9 360 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 TSGA10Q9BZW7 698 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 WDCPQ9H6R7 721 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 THG1LQ9NWX6 298 aaKnown RBP12.72□□□□□ -0.37
SHMT2-209ENST00000553949 TRIM10Q9UDY6 481 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 AGO1Q9UL18 857 aaKnown RBP12.72□□□□□ -0.37
SHMT2-209ENST00000553949 PPP2R2CQ9Y2T4 447 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 PAXBP1Q9Y5B6 917 aa12.72□□□□□ -0.37
SHMT2-209ENST00000553949 DENND4CQ5VZ89 1909 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 TMEM110-MUSTN1A8MSY1 372 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 BUB1O43683 1085 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 RNF8O76064 485 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 MOCS2O96007 188 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-209ENST00000553949 MAN1A1P33908 653 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 ARHGAP25P42331 645 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 SLC11A2P49281 568 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 NAP1L1P55209 391 aaKnown RBP12.71□□□□□ -0.37
SHMT2-209ENST00000553949 MESDQ14696 234 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms