RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 OR2I1PQ8NGU4 316 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 SPATA18Q8TC71 538 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 FUBP3Q96I24 572 aaKnown RBP eCLIP7.78□□□□□ -1.16
ATXN3-219ENST00000553488 BBC3Q96PG8 261 aaPredicted RBP7.78□□□□□ -1.16
ATXN3-219ENST00000553488 ST6GALNAC4Q9H4F1 302 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 ZDHHC4Q9NPG8 344 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 DDX43Q9NXZ2 648 aaKnown RBP7.78□□□□□ -1.16
ATXN3-219ENST00000553488 GTF3C4Q9UKN8 822 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 AGO2Q9UKV8 859 aaKnown RBP7.78□□□□□ -1.16
ATXN3-219ENST00000553488 SOX13Q9UN79 622 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 NAV2Q8IVL1 2488 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 NUMA1Q14980 2115 aa7.78□□□□□ -1.16
ATXN3-219ENST00000553488 ZNF462Q96JM2 2506 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 TCRBV21S2A2A0A5A6 115 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 VWA3AA6NCI4 1184 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 LINC01387J3KSC0 135 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 PDE2AO00408 941 aaPredicted RBP7.77□□□□□ -1.17
ATXN3-219ENST00000553488 ALDH1A2O94788 518 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 KAT7O95251 611 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 IL18RAPO95256 599 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 OAS1P00973 400 aaKnown RBP7.77□□□□□ -1.17
ATXN3-219ENST00000553488 ITGB3P05106 788 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 CFIP05156 583 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 SERPINF2P08697 491 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 PFKLP17858 780 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 HDCP19113 662 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 POLR2BP30876 1174 aaKnown RBP7.77□□□□□ -1.17
ATXN3-219ENST00000553488 MYL7Q01449 175 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 SCAPQ12770 1279 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 DHCR24Q15392 516 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 DUOXA1Q1HG43 343 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 FOXD4L6Q3SYB3 417 aaPredicted RBP7.77□□□□□ -1.17
ATXN3-219ENST00000553488 EMC10Q5UCC4 262 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 FAM171BQ6P995 826 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 FOXD4L3Q6VB84 417 aaPredicted RBP7.77□□□□□ -1.17
ATXN3-219ENST00000553488 LIMS2Q7Z4I7 341 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 TTC30AQ86WT1 665 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 BRSK2Q8IWQ3 736 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 ADGRF2Q8IZF7 708 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 TMEM86AQ8N2M4 240 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 MINDY1Q8N5J2 469 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 TOP6BLQ8N6T0 577 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 LRRC52Q8N7C0 313 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 KBTBD7Q8WVZ9 684 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 HMGB4Q8WW32 186 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 SPATA17Q96L03 361 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 CITED4Q96RK1 184 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 TTLL2Q9BWV7 592 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 STRA6Q9BX79 667 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 MRPL18Q9H0U6 180 aaKnown RBP7.77□□□□□ -1.17
ATXN3-219ENST00000553488 CD248Q9HCU0 757 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 GDAP2Q9NXN4 497 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 SIX4Q9UIU6 781 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 LIMCH1Q9UPQ0 1083 aa7.77□□□□□ -1.17
ATXN3-219ENST00000553488 ZNF840PA6NDX5 716 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SOWAHDA6NJG2 315 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 F8W735 103 aaPredicted RBP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SCAMP3O14828 347 aaKnown RBP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 AP5Z1O43299 807 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SLC26A4O43511 780 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 DYRK3O43781 588 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 OPHN1O60890 802 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 HUS1O60921 280 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 APODP05090 189 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 H2AFB1P0C5Y9 115 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 H2AFB2P0C5Z0 115 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 EDN3P14138 238 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 GABRG2P18507 467 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 PLCG1P19174 1290 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 ABCD1P33897 745 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 PDE6CP51160 858 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 KDSRQ06136 332 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 RESTQ13127 1097 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SOWAHAQ2M3V2 549 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 COL28A1Q2UY09 1125 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 RILPL1Q5EBL4 403 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 EOGTQ5NDL2 527 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 ARL6IP4Q66PJ3 421 aaKnown RBP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SLFN12LQ6IEE8 588 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 RHBDF2Q6PJF5 856 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 C19orf48Q6RUI8 117 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SPATA2LQ8IUW3 424 aaPredicted RBP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SLC41A1Q8IVJ1 513 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SCN4BQ8IWT1 228 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 ADGRG2Q8IZP9 1017 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 HDDC3Q8N4P3 179 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 FSIP1Q8NA03 581 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 FAM184AQ8NB25 1140 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CEP76Q8TAP6 659 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 ADAMTS14Q8WXS8 1223 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 RAD54LQ92698 747 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 MYLPFQ96A32 169 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CDK5RAP3Q96JB5 506 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 MEGF10Q96KG7 1140 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CEP295NLQ96MC4 621 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 CAMK1GQ96NX5 476 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 PNKPQ96T60 521 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 SYT15Q9BQS2 421 aa7.76□□□□□ -1.17
ATXN3-219ENST00000553488 GTPBP2Q9BX10 602 aaKnown RBP7.76□□□□□ -1.17
ATXN3-219ENST00000553488 BHLHE41Q9C0J9 482 aaPredicted RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms