RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691	SORCS2	Q96PQ0	1159 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	HEPH	Q9BQS7	1158 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	FSD1	Q9BTV5	496 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	SORBS1	Q9BX66	1292 aa	Known RBP	4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	C1QTNF3	Q9BXJ4	246 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	TMEM120A	Q9BXJ8	343 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	MAGEH1	Q9H213	219 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	EPC1	Q9H2F5	836 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	BRD9	Q9H8M2	597 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	IL23A	Q9NPF7	189 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	OBP2B	Q9NPH6	170 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	JADE2	Q9NQC1	790 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	TM7SF3	Q9NS93	570 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	IRAK4	Q9NWZ3	460 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	ZSCAN32	Q9NX65	697 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	CFAP97	Q9P2B7	532 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	MYO1A	Q9UBC5	1043 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	GRHPR	Q9UBQ7	328 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	MAN2B2	Q9Y2E5	1009 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	EP300	Q09472	2414 aa	Predicted RBP	4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	PHIP	Q8WWQ0	1821 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	SPEG	Q15772	3267 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	ZZEF1	O43149	2961 aa		4.25	□□□□□ -1.73
LIMA1-208	ENST00000551691	GCN1	Q92616	2671 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	FRY	Q5TBA9	3013 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691		A0A0A6YYK5	440 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	NPEPPSL1	A6NEC2	478 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PROB1	E7EW31	1015 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691		F8W8V4	182 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	OVOL3	O00110	214 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	SYT5	O00445	386 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ACKR2	O00590	384 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	NRP1	O14786	923 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	KIAA0391	O15091	583 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	GPR42	O15529	346 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	SEPT4	O43236	478 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PLA2G6	O60733	806 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	MAF	O75444	373 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ITGA10	O75578	1167 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	RHOBTB3	O94955	611 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PDGFB	P01127	241 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	GAST	P01350	101 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	AMH	P03971	560 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	GAA	P10253	952 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	MTHFD1	P11586	935 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ZNF28	P17035	718 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PRDX5	P30044	214 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PAPOLA	P51003	745 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	IRX3	P78415	501 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PTH1R	Q03431	593 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	POSTN	Q15063	836 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	STIL	Q15468	1287 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	C19orf54	Q5BKX5	351 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	RRAGB	Q5VZM2	374 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	TRMT10B	Q6PF06	316 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	KLHL17	Q6TDP4	642 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	CYP26C1	Q6V0L0	522 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	C4orf50	Q6ZRC1	276 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ANKRD33	Q7Z3H0	272 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	UBE3B	Q7Z3V4	1068 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PPP1R3B	Q86XI6	285 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	KIAA2013	Q8IYS2	634 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	CACNA2D3	Q8IZS8	1091 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	TMEM199	Q8N511	208 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	CELF5	Q8N6W0	485 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	GIMAP8	Q8ND71	665 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	IFI44	Q8TCB0	444 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	STON2	Q8WXE9	905 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	NMD3	Q96D46	503 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PLEKHF1	Q96S99	279 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	SOX7	Q9BT81	388 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	CNPPD1	Q9BV87	410 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	MRI	Q9BWK5	157 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	C1orf43	Q9BWL3	253 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	TRIM54	Q9BYV2	358 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ZNF518B	Q9C0D4	1074 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	C11orf54	Q9H0W9	315 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	MRPL46	Q9H2W6	279 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	L2HGDH	Q9H9P8	463 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	SEPSECS	Q9HD40	501 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ITM2C	Q9NQX7	267 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	SIDT1	Q9NXL6	827 aa	Known RBP	4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	NCDN	Q9UBB6	729 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ZDHHC8	Q9ULC8	765 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	MTUS1	Q9ULD2	1270 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	CRYL1	Q9Y2S2	319 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	PTPRF	P10586	1907 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	RFX7	Q2KHR2	1363 aa		4.24	□□□□□ -1.73
LIMA1-208	ENST00000551691	ZNF521	Q96K83	1311 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	MYADML2	A6NDP7	307 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	HMX3	A6NHT5	357 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	TIMM44	O43615	452 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	RNASEH2A	O75792	299 aa	Known RBP	4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	INMT	O95050	263 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	CNOT4	O95628	575 aa	Known RBP	4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	MT-ND5	P03915	603 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	CSF1R	P07333	972 aa		4.23	□□□□□ -1.73
LIMA1-208	ENST00000551691	ITGA2B	P08514	1039 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms