RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 TRIM61Q5EBN2 209 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 C10orf76Q5T2E6 689 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 EMC10Q5UCC4 262 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 FOXD4L5Q5VV16 416 aaPredicted RBP8.04□□□□□ -1.12
NEK3-201ENST00000550331 LYSMD4Q5XG99 296 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 CEP135Q66GS9 1140 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 GRAMD4Q6IC98 578 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 KLHDC10Q6PID8 442 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 SLC23A3Q6PIS1 610 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 HTR3DQ70Z44 454 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 RABEPKQ7Z6M1 372 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 TMEM25Q86YD3 366 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 HSCBQ8IWL3 235 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 GRAMD1CQ8IYS0 662 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 ZNF513Q8N8E2 541 aaPredicted RBP8.04□□□□□ -1.12
NEK3-201ENST00000550331 NAT16Q8N8M0 369 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 ZNF511Q8NB15 262 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 HMGB4Q8WW32 186 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 RLN3Q8WXF3 142 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 FOXD4L4Q8WXT5 416 aaPredicted RBP8.04□□□□□ -1.12
NEK3-201ENST00000550331 PIGKQ92643 395 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 CDK15Q96Q40 435 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 HNRNPABQ99729 332 aaKnown RBP8.04□□□□□ -1.12
NEK3-201ENST00000550331 NUSAP1Q9BXS6 441 aaKnown RBP8.04□□□□□ -1.12
NEK3-201ENST00000550331 IMPG2Q9BZV3 1241 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 DNAI2Q9GZS0 605 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 CYP3A43Q9HB55 503 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.04□□□□□ -1.12
NEK3-201ENST00000550331 MARK1Q9P0L2 795 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 WDR35Q9P2L0 1181 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 MBD1Q9UIS9 605 aaPredicted RBP8.04□□□□□ -1.12
NEK3-201ENST00000550331 KLK13Q9UKR3 277 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 SCML2Q9UQR0 700 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 TRAF3IP3Q9Y228 551 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 FRMD4BQ9Y2L6 1034 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 MSRB2Q9Y3D2 182 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 PCDHA5Q9Y5H7 936 aa8.04□□□□□ -1.12
NEK3-201ENST00000550331 PTPRDP23468 1912 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 HELZP42694 1942 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 CEP192Q8TEP8 1941 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 ACACAQ13085 2346 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 A0A1W2PQF6 199 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 HHLA1C9JL84 531 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 AP5Z1O43299 807 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 CALUO43852 315 aaPredicted RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 ZNF217O75362 1048 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 HLA-DRAP01903 254 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 FAM200BP0CF97 657 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 IRF1P10914 325 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 HOXB2P14652 356 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 TYRP14679 529 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 CD46P15529 392 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 PFKFB1P16118 471 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 GABRG2P18507 467 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 CMA1P23946 247 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 NTSR1P30989 418 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 ATP5C1P36542 298 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 PGFP49763 221 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 DNM1Q05193 864 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 ORC1Q13415 861 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 FOXD4L6Q3SYB3 417 aaPredicted RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 SOWAHCQ53LP3 525 aaPredicted RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 C1orf220Q5T0J3 134 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 SDE2Q6IQ49 451 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 C19orf48Q6RUI8 117 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 FOXD4L3Q6VB84 417 aaPredicted RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 SLC36A4Q6YBV0 504 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 CLEC20AQ6ZU45 233 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 INTS8Q75QN2 995 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 ARMCX6Q7L4S7 300 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 TADA2BQ86TJ2 420 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 TMEFF1Q8IYR6 380 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 PGBD3Q8N328 593 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 VWA5B2Q8N398 1253 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 ZNF276Q8N554 614 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 C12orf29Q8N999 325 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 CEP76Q8TAP6 659 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 FAM174AQ8TBP5 190 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 BAP1Q92560 729 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 WBP2Q969T9 261 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 ELMO3Q96BJ8 720 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 CYFIP2Q96F07 1278 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 XPO6Q96QU8 1125 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 GABRG3Q99928 467 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 BBS2Q9BXC9 721 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 NT5C1AQ9BXI3 368 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 NIF3L1Q9GZT8 377 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 SLC32A1Q9H598 525 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 ZDHHC4Q9NPG8 344 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 FAM49BQ9NUQ9 324 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 TMEM74BQ9NUR3 256 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 DNAJC17Q9NVM6 304 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 HMGXB4Q9UGU5 601 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 LSM7Q9UK45 103 aaKnown RBP8.03□□□□□ -1.12
NEK3-201ENST00000550331 PILRBQ9UKJ0 227 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 HPSEQ9Y251 543 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 LOC400499M0QZD8 3231 aa8.03□□□□□ -1.12
NEK3-201ENST00000550331 HELZ2Q9BYK8 2649 aaKnown RBP8.02□□□□□ -1.12
NEK3-201ENST00000550331 FREM2Q5SZK8 3169 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms