RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PKP1Q13835 747 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 EIF4HQ15056 248 aaKnown RBP13.49□□□□□ -0.25
PTCH1-218ENST00000548945 PLEKHG6Q3KR16 790 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 FUT11Q495W5 492 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 RAB41Q5JT25 222 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 KRT39Q6A163 491 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 KIAA1324Q6UXG2 1013 aaKnown RBP13.49□□□□□ -0.25
PTCH1-218ENST00000548945 RGL4Q8IZJ4 473 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 CPXM2Q8N436 756 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 CADM4Q8NFZ8 388 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 DNASE2BQ8WZ79 361 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 BHMTQ93088 406 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 PIWIL1Q96J94 861 aaKnown RBP13.49□□□□□ -0.25
PTCH1-218ENST00000548945 SLC2A11Q9BYW1 496 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 PRDM16Q9HAZ2 1276 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 FSCN3Q9NQT6 498 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 ITM2CQ9NQX7 267 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 WSB2Q9NYS7 404 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-218ENST00000548945 PLK2Q9NYY3 685 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 STRIP2Q9ULQ0 834 aa13.49□□□□□ -0.25
PTCH1-218ENST00000548945 NUMA1Q14980 2115 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 WASH3PC4AMC7 463 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 STX10O60499 249 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 IGLV3-19P01714 112 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 CYBBP04839 570 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 OXTRP30559 389 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 CORO1AP31146 461 aaKnown RBP13.48□□□□□ -0.25
PTCH1-218ENST00000548945 SYKP43405 635 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 SLC8A3P57103 927 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 DPYDQ12882 1025 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 ADAM9Q13443 819 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 EDRF1Q3B7T1 1238 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 ZCWPW2Q504Y3 356 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 ARHGAP17Q68EM7 881 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 ANKS1BQ7Z6G8 1248 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 RAB44Q7Z6P3 723 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-218ENST00000548945 FAM217AQ8IXS0 508 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 ZCCHC14Q8WYQ9 949 aaKnown RBP13.48□□□□□ -0.25
PTCH1-218ENST00000548945 P2RY11Q96G91 374 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 TMEM176AQ96HP8 235 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 SPATA32Q96LK8 384 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 HEXIM2Q96MH2 286 aaKnown RBP13.48□□□□□ -0.25
PTCH1-218ENST00000548945 SLC6A17Q9H1V8 727 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 MARCH2Q9P0N8 246 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 RASAL2Q9UJF2 1139 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 AGO1Q9UL18 857 aaKnown RBP13.48□□□□□ -0.25
PTCH1-218ENST00000548945 APC2O95996 2303 aa13.48□□□□□ -0.25
PTCH1-218ENST00000548945 GOLGA4Q13439 2230 aaKnown RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 A0A1B0GTW7 788 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 SRRM3A6NNA2 597 aaPredicted RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 TIMM44O43615 452 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 SYNCRIPO60506 623 aaKnown RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 IL12RB1P42701 662 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 KRT85P78386 507 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 EFEMP1Q12805 493 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 GEN1Q17RS7 908 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 PM20D1Q6GTS8 502 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 RSRC2Q7L4I2 434 aaKnown RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 ANKRD52Q8NB46 1076 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 SLC4A11Q8NBS3 891 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 FBXL13Q8NEE6 735 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 PLD4Q96BZ4 506 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 TOE1Q96GM8 510 aaKnown RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 MKRN2Q9H000 416 aaKnown RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 PCED1AQ9H1Q7 454 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 CD93Q9NPY3 652 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 CISHQ9NSE2 258 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 OLA1Q9NTK5 396 aaKnown RBP13.47□□□□□ -0.25
PTCH1-218ENST00000548945 ELOVL2Q9NXB9 296 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 KLK13Q9UKR3 277 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 IGSF10Q6WRI0 2623 aa13.47□□□□□ -0.25
PTCH1-218ENST00000548945 KNTC1P50748 2209 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 PTPRBP23467 1997 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 MEI4A8MW99 385 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 ZBED1O96006 694 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 ZNF883P0CG24 379 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 C7P10643 843 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 NCAM1P13591 858 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 MXI1P50539 228 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 TPMTP51580 245 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 NDUFA8P51970 172 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 RAD23BP54727 409 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 ZNF445P59923 1031 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 YWHAGP61981 247 aaKnown RBP eCLIP13.46□□□□□ -0.25
PTCH1-218ENST00000548945 FAM193AP78312 1265 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 PDE4CQ08493 712 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 GRIK2Q13002 908 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 ZNF234Q14588 700 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 TRIP6Q15654 476 aaKnown RBP13.46□□□□□ -0.25
PTCH1-218ENST00000548945 ZNF394Q53GI3 561 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 PIGZQ86VD9 579 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 TMPRSS6Q8IU80 811 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 DENND1CQ8IV53 801 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 RBBP8NLQ8NC74 664 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-218ENST00000548945 OR2I1PQ8NGU4 316 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 PRCCQ92733 491 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-218ENST00000548945 SIPA1Q96FS4 1042 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 NUP58Q9BVL2 599 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 GPR174Q9BXC1 333 aa13.46□□□□□ -0.25
PTCH1-218ENST00000548945 RAB20Q9NX57 234 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms