RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ACADSP16219 412 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 BGNP21810 368 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ATICP31939 592 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 GRIA2P42262 883 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 GCLCP48506 637 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ACOT2P49753 483 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 RGS19P49795 217 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 STAT2P52630 851 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SESN2P58004 480 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PSMC1P62191 440 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CHI3L2Q15782 390 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 FAM209AQ5JX71 171 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ACBD5Q5T8D3 534 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TDRD10Q5VZ19 366 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 OR6B2Q6IFH4 312 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 LAYNQ6UX15 382 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 EEPD1Q7L9B9 569 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 THNSL1Q8IYQ7 743 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ST13P5Q8NFI4 369 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CYP2W1Q8TAV3 490 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CDKL2Q92772 493 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SYN2Q92777 582 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 OPTNQ96CV9 577 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TMA16Q96EY4 203 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 WNK4Q96J92 1243 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MPP4Q96JB8 637 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MAGEB18Q96M61 343 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM121Q9BTD3 319 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MIS12Q9H081 205 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TDRD3Q9H7E2 651 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM206Q9H813 350 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 FBXO6Q9NRD1 293 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 EPS15L1Q9UBC2 864 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SLC6A14Q9UN76 642 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 A0A0G2JLL6 359 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CDC14CA4D256 554 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 IPO5O00410 1097 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PJA2O43164 708 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CSDE1O75534 798 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 UNC5CO95185 931 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CELF2O95319 508 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 RRM1P23921 792 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PTPN4P29074 926 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TPP2P29144 1249 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CTGFP29279 349 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 EEF1DP29692 281 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MAPK10P53779 464 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CAV1Q03135 178 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PRPSAP1Q14558 356 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TM4SF20Q53R12 229 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 LRRC74BQ6ZQY2 392 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MOB2Q70IA6 237 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 HAUS6Q7Z4H7 955 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PRRT2Q7Z6L0 340 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SLC47A2Q86VL8 602 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CPNE8Q86YQ8 564 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ZDHHC14Q8IZN3 488 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 NDUFAF2Q8N183 169 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 RYBPQ8N488 228 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 NEDD1Q8NHV4 660 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 EXT2Q93063 718 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ERLEC1Q96DZ1 483 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CLMNQ96JQ2 1002 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CAPNS2Q96L46 248 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 LXNQ9BS40 222 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 DCUN1D5Q9BTE7 237 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 NRSN2Q9GZP1 204 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 THEGQ9P2T0 379 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SLC12A6Q9UHW9 1150 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM59LQ9UK28 342 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SMG5Q9UPR3 1016 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 LRCH1Q9Y2L9 728 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ATG2AQ2TAZ0 1938 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TCRBV7S2A1N4TA0A589 114 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TISP43B9A030 160 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TRIM49D1C9J1S8 452 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 KIAA0391O15091 583 aaKnown RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 AOC2O75106 756 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 BANF1O75531 89 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 GRAP2O75791 330 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 SRGAP2CP0DJJ0 459 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 MCF2P10911 925 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 RPA3P35244 121 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CHKAP35790 457 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 OCRLQ01968 901 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 DSG1Q02413 1049 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 BMPR2Q13873 1038 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 RASA2Q15283 850 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 DEFB115Q30KQ5 88 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 EDRF1Q3B7T1 1238 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 TCHHL1Q5QJ38 904 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 DCAF12L1Q5VU92 463 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 ARHGEF16Q5VV41 709 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 KRT39Q6A163 491 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 C11orf63Q6NUN7 778 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 LBX2Q6XYB7 198 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 STRA8Q7Z7C7 330 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 IFNEQ86WN2 208 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms