RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 MAGEA3P43357 314 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 TNFAIP2Q03169 654 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 KLC1Q07866 573 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 STX3Q13277 289 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 CCDC185Q8N715 623 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 NDRG1Q92597 394 aaKnown RBP16.33■□□□□ 0.2
LDLR-204ENST00000545707 FAM136AQ96C01 138 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 LGMNQ99538 433 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 TMPRSS4Q9NRS4 437 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 DLGAP2Q9P1A6 1054 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 PDGFRBP09619 1106 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 PSEN1P49768 467 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 SESN2P58004 480 aaPredicted RBP16.33■□□□□ 0.2
LDLR-204ENST00000545707 MXRA7P84157 204 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 SOWAHAQ2M3V2 549 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 GLRA4Q5JXX5 417 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 CES3Q6UWW8 571 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 ATG14Q6ZNE5 492 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 TMPRSS6Q8IU80 811 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 PPP1R14CQ8TAE6 165 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 SLC35F5Q8WV83 523 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 ZMAT2Q96NC0 199 aaKnown RBP16.33■□□□□ 0.2
LDLR-204ENST00000545707 KRT82Q9NSB4 513 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 MTMR10Q9NXD2 777 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 ERAP1Q9NZ08 941 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 GPRC5DQ9NZD1 345 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 RBPJLQ9UBG7 517 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 HESX1Q9UBX0 185 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 HES2Q9Y543 173 aa16.33■□□□□ 0.2
LDLR-204ENST00000545707 GSRP00390 522 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 ADORA2BP29275 332 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 CRHR1P34998 444 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 MAGEA6P43360 314 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 KCTD2Q14681 263 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 PKDCCQ504Y2 493 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 FASTKD1Q53R41 847 aaKnown RBP16.32■□□□□ 0.2
LDLR-204ENST00000545707 MCUQ8NE86 351 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 TEKT4Q8WW24 435 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 ZNF778Q96MU6 729 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 PANX3Q96QZ0 392 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 KCTD15Q96SI1 283 aaPredicted RBP16.32■□□□□ 0.2
LDLR-204ENST00000545707 ZNF670Q9BS34 389 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 CCDC106Q9BWC9 280 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 SLC4A5Q9BY07 1137 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 SHCBP1LQ9BZQ2 653 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 WWP1Q9H0M0 922 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 STX18Q9P2W9 335 aaKnown RBP16.32■□□□□ 0.2
LDLR-204ENST00000545707 AP4E1Q9UPM8 1137 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 PCDHA11Q9Y5I1 949 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 PSAT1Q9Y617 370 aa16.32■□□□□ 0.2
LDLR-204ENST00000545707 A6NJR5 290 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 ADM5C9JUS6 153 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 SNNO75324 88 aaPredicted RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 GCATO75600 419 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 CCDC130P13994 396 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 VAV1P15498 845 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 GOT1P17174 413 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 TMEM62Q0P6H9 643 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 OLIG2Q13516 323 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 RIPOR1Q6ZS17 1223 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 TMEM110Q86TL2 294 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 CDKL3Q8IVW4 592 aaPredicted RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 SCUBE1Q8IWY4 988 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 POU5F2Q8N7G0 328 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 OR6B3Q8NGW1 331 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 C18orf25Q96B23 403 aaPredicted RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 FRMD8Q9BZ67 464 aaPredicted RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 MMADHCQ9H3L0 296 aaPredicted RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 DTLQ9NZJ0 730 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 ITGA11Q9UKX5 1188 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 PLA2G4CQ9UP65 541 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 CSADQ9Y600 493 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 MCM3APO60318 1980 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 SYNJ2BP-COX16A0A087WUM0 186 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 SPECC1L-ADORA2AF8WAN1 911 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 DPYSL4O14531 572 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 MDM4O15151 490 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 TSPAN1O60635 241 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 ALDOAP04075 364 aaKnown RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 C6orf222P0C671 652 aaPredicted RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 PPM1JQ5JR12 505 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 HEATR6Q6AI08 1181 aaKnown RBP16.31■□□□□ 0.2
LDLR-204ENST00000545707 TRIM42Q8IWZ5 723 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 ULK2Q8IYT8 1036 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 CFAP61Q8NHU2 1237 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 CSPG4P5Q96PW8 444 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 TTC1Q99614 292 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 COX16Q9P0S2 106 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 TUBGCP4Q9UGJ1 667 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 SLC7A8Q9UHI5 535 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 TAGLN3Q9UI15 199 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 EMCNQ9ULC0 261 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 DNAJC16Q9Y2G8 782 aa16.31■□□□□ 0.2
LDLR-204ENST00000545707 USP1O94782 785 aa16.3■□□□□ 0.2
LDLR-204ENST00000545707 LGALS2P05162 132 aa16.3■□□□□ 0.2
LDLR-204ENST00000545707 MRPS35P82673 323 aaKnown RBP16.3■□□□□ 0.2
LDLR-204ENST00000545707 FAM187BQ17R55 369 aa16.3■□□□□ 0.2
LDLR-204ENST00000545707 N4BP2L1Q5TBK1 243 aaPredicted RBP16.3■□□□□ 0.2
LDLR-204ENST00000545707 FAM131BQ86XD5 332 aa16.3■□□□□ 0.2
LDLR-204ENST00000545707 LRRC39Q96DD0 335 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms