RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 A0A1W2PQH9 124 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 FAM149AA5PLN7 773 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 E9PAM4 449 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 PAPSS1O43252 624 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 TNFSF14O43557 240 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 F13A1P00488 732 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 HSP90AA1P07900 732 aaKnown RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 ZSCAN22P10073 491 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 PRKCHP24723 683 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 NDST1P52848 882 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 CEBPZQ03701 1054 aaKnown RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 ORC1Q13415 861 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 FAM26FQ5R3K3 315 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 FOXD4L5Q5VV16 416 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 TMEM215Q68D42 235 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 SCARA5Q6ZMJ2 495 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 SCD5Q86SK9 330 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 UNC93AQ86WB7 457 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 FOXD4L4Q8WXT5 416 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 PRCCQ92733 491 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 UBL7Q96S82 380 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 C6orf106Q9H6K1 298 aaPredicted RBP13.49□□□□□ -0.25
USP28-212ENST00000544750 ELOVL2Q9NXB9 296 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 DNMT3LQ9UJW3 386 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP28-212ENST00000544750 SNX11Q9Y5W9 270 aa13.49□□□□□ -0.25
USP28-212ENST00000544750 NYNRINQ9P2P1 1898 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 EIF4E1BA6NMX2 242 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 LRRIQ3A6PVS8 624 aaPredicted RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 PCDHGA12O60330 932 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 PHACTR2O75167 634 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 PRB1P04280 392 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 ACSL1P33121 698 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 GRIA4P48058 902 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 AFF3P51826 1226 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 KIF11P52732 1056 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 NCOA4Q13772 614 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 SUZ12Q15022 739 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 EIF4HQ15056 248 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 NELFCDQ8IXH7 590 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 LINC00301Q8NCQ3 95 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 UCMAQ8WVF2 138 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 HNRNPABQ99729 332 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 ORAI3Q9BRQ5 295 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 LRRC27Q9C0I9 530 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 PNPLA8Q9NP80 782 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 FAM49BQ9NUQ9 324 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 CGNQ9P2M7 1197 aaKnown RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 ZNF510Q9Y2H8 683 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.48□□□□□ -0.25
USP28-212ENST00000544750 PCDHA5Q9Y5H7 936 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 USP3Q9Y6I4 520 aa13.48□□□□□ -0.25
USP28-212ENST00000544750 MGAQ8IWI9 3026 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 GOLGA8CPA6NN73 597 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 TK2O00142 265 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 SYNCRIPO60506 623 aaKnown RBP13.47□□□□□ -0.25
USP28-212ENST00000544750 FAM200BP0CF97 657 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 ADORA2BP29275 332 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 CHKAP35790 457 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 GRK6P43250 576 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 ABCG1P45844 678 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 AP3M2P53677 418 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 ASIC1P78348 528 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 BIRC3Q13489 604 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 CAMK2GQ13555 558 aaPredicted RBP13.47□□□□□ -0.25
USP28-212ENST00000544750 KCNT1Q5JUK3 1230 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 C10orf120Q5SQS8 335 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 CCDC186Q7Z3E2 898 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 ANKS1BQ7Z6G8 1248 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 FAM217AQ8IXS0 508 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 OR2T3Q8NH03 318 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 IGSF8Q969P0 613 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 TWNKQ96RR1 684 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 C7orf25Q9BPX7 421 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 CUEDC2Q9H467 287 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 PRORYQ9H606 182 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 TM9SF3Q9HD45 589 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 CLIC5Q9NZA1 410 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 TFIP11Q9UBB9 837 aaKnown RBP13.47□□□□□ -0.25
USP28-212ENST00000544750 ANKRD6Q9Y2G4 727 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 ZDHHC9Q9Y397 364 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 DOCK9Q9BZ29 2069 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 TENM4Q6N022 2769 aa13.47□□□□□ -0.25
USP28-212ENST00000544750 H0Y8X5 98 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 KCNK3O14649 394 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 TSPAN3O60637 253 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 ASS1P00966 412 aaKnown RBP13.46□□□□□ -0.25
USP28-212ENST00000544750 EPHX1P07099 455 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 ACADMP11310 421 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 PDIA4P13667 645 aaKnown RBP13.46□□□□□ -0.25
USP28-212ENST00000544750 ITPKBP27987 946 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 CTSKP43235 329 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 ASPAP45381 313 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 PSEN1P49768 467 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 INCA1Q0VD86 236 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 C19orf57Q0VDD7 668 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 SGSM1Q2NKQ1 1148 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 ZACNQ401N2 412 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 DHRS13Q6UX07 377 aa13.46□□□□□ -0.25
USP28-212ENST00000544750 UNC13DQ70J99 1090 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms