RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 MFSD2AQ8NA29 543 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 OR2I1PQ8NGU4 316 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 DEPTORQ8TB45 409 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 BAHD1Q8TBE0 780 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 SPATA18Q8TC71 538 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 C2orf15Q8WU43 125 aaKnown RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 CYB5D2Q8WUJ1 264 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 HMGB4Q8WW32 186 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 USP13Q92995 863 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 DYDC2Q96IM9 177 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 SEPT5Q99719 369 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 DPH2Q9BQC3 489 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 YIPF2Q9BWQ6 316 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 RNF26Q9BY78 433 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 RWDD1Q9H446 243 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 TTC12Q9H892 705 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 KCNMB3Q9NPA1 279 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 UXTQ9UBK9 157 aaPredicted RBP4.41□□□□□ -1.7
SNHG1-220ENST00000544550 IGF2RP11717 2491 aa4.41□□□□□ -1.7
SNHG1-220ENST00000544550 NID2Q14112 1375 aa4.4□□□□□ -1.7
SNHG1-220ENST00000544550 LAMA5O15230 3695 aa4.4□□□□□ -1.7
SNHG1-220ENST00000544550 NOTCH4Q99466 2003 aa4.4□□□□□ -1.7
SNHG1-220ENST00000544550 FLNBO75369 2602 aaKnown RBP4.4□□□□□ -1.7
SNHG1-220ENST00000544550 ENO4A6NNW6 628 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PLK4O00444 970 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 SLC27A2O14975 620 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 SLC37A4O43826 429 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 USO1O60763 962 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 NDUFS2O75306 463 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 SLITRK3O94933 977 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 UBOX5O94941 541 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 GJB6O95452 261 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 KLF8O95600 359 aaPredicted RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 APODP05090 189 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ATXN1LP0C7T5 689 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 CSH1P0DML2 217 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 CSH2P0DML3 217 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TYMPP19971 482 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 IGFBP6P24592 240 aaPredicted RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 CHMLP26374 656 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 MAP4P27816 1152 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 POLR2BP30876 1174 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ACTN2P35609 894 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 NAMPTP43490 491 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TMPRSS3P57727 454 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 SCRN1Q12765 414 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 MAP7Q14244 749 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF77Q15935 545 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PCSK4Q6UW60 755 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ALKAL1Q6UXT8 129 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 DBX2Q6ZNG2 339 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 MON1AQ86VX9 555 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 EFCAB13Q8IY85 973 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PHACTR4Q8IZ21 702 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 BLIDQ8IZY5 108 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 CCDC33Q8N5R6 958 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ALLCQ8N6M5 410 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 KIAA1958Q8N8K9 716 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TRIML1Q8N9V2 468 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 FSIP1Q8NA03 581 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 IL17RCQ8NAC3 791 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TXNDC5Q8NBS9 432 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ATAD1Q8NBU5 361 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 SPPL2BQ8TCT7 592 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 FGF11Q92914 225 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 UTP4Q969X6 686 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TMEM176AQ96HP8 235 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF419Q96HQ0 510 aaPredicted RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 HSPA12BQ96MM6 686 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ACAP3Q96P50 834 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PNKPQ96T60 521 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 CXCL16Q9H2A7 254 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 GAREM1Q9H706 876 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TMEM206Q9H813 350 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PRDM16Q9HAZ2 1276 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 ST7Q9NRC1 585 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TM7SF3Q9NS93 570 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 RGL1Q9NZL6 768 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 VPS54Q9P1Q0 977 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 IL17BQ9UHF5 180 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 NAP1L2Q9ULW6 460 aaPredicted RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 MAPK8IP1Q9UQF2 711 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 CCL26Q9Y258 94 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TNFSF13BQ9Y275 285 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 PCDHGA1Q9Y5H4 931 aa4.4□□□□□ -1.71
SNHG1-220ENST00000544550 HEMK1Q9Y5R4 338 aaPredicted RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TDRD15B5MCY1 1934 aaKnown RBP4.4□□□□□ -1.71
SNHG1-220ENST00000544550 TRAV19A0A0A6YYK7 116 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 IGHV1OR15-9A0A0B4J2B8 117 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 FAM95CA0A1B0GW59 222 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 FAM149AA5PLN7 773 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 SGK1O00141 431 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 SLC9A3R1O14745 358 aaPredicted RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 ADAMTS3O15072 1205 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 XPOTO43592 962 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 TLX3O43711 291 aaPredicted RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 CCNT1O60563 726 aaKnown RBP4.39□□□□□ -1.71
SNHG1-220ENST00000544550 KAT7O95251 611 aa4.39□□□□□ -1.71
SNHG1-220ENST00000544550 LARGE1O95461 756 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms