RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 OTUD1Q5VV17 481 aaPredicted RBP18.64■□□□□ 0.57
VIM-209ENST00000544301 C2orf69Q8N8R5 385 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 ZNF398Q8TD17 642 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 TFB1MQ8WVM0 346 aaKnown RBP18.64■□□□□ 0.57
VIM-209ENST00000544301 RCOR3Q9P2K3 495 aaPredicted RBP18.64■□□□□ 0.57
VIM-209ENST00000544301 NR2E3Q9Y5X4 410 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 DOCK3Q8IZD9 2030 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 C17orf102A2RUQ5 167 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 HACD1B0YJ81 288 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 PTGESO14684 152 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 ATP5HO75947 161 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 KRT37O76014 449 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 BEST1O76090 585 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 TROVE2P10155 538 aaKnown RBP eCLIP18.63■□□□□ 0.57
VIM-209ENST00000544301 LRPAP1P30533 357 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 PITX1P78337 314 aaPredicted RBP18.63■□□□□ 0.57
VIM-209ENST00000544301 CCL14Q16627 93 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 DCAF6Q58WW2 860 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 PAQR9Q6ZVX9 377 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 PSTKQ8IV42 348 aaKnown RBP18.63■□□□□ 0.57
VIM-209ENST00000544301 HTR3CQ8WXA8 447 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 TRIM56Q9BRZ2 755 aaKnown RBP18.63■□□□□ 0.57
VIM-209ENST00000544301 MAD1L1Q9Y6D9 718 aa18.63■□□□□ 0.57
VIM-209ENST00000544301 C2CD2LO14523 706 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 CYB561D2O14569 222 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 UGT1A9O60656 530 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 NPR3P17342 541 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 PTPN1P18031 435 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 ACAT1P24752 427 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 GRIA1P42261 906 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 SLC8A3P57103 927 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 MRPS5P82675 430 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 OVGP1Q12889 678 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 NME8Q8N427 588 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 GSDMBQ8TAX9 411 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 NT5C3BQ969T7 300 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 TTC17Q96AE7 1141 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 UGT1A7Q9HAW7 530 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 UGT1A10Q9HAW8 530 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 UGT1A8Q9HAW9 530 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 XAB2Q9HCS7 855 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 ARHGEF4Q9NR80 690 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 A0A0A0MRY4 1105 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 FAM159BA6NKW6 160 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 COPEO14579 308 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 CSH1P0DML2 217 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 CSH2P0DML3 217 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 SLC8A1P32418 973 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 NDUFV1P49821 464 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 ANKRD20A2Q5SQ80 823 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 LGSNQ5TDP6 509 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 ANKRD20A1Q5TYW2 823 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 ANKRD20A3Q5VUR7 823 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 WSCD1Q658N2 575 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 TWF2Q6IBS0 349 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 TRMT10BQ6PF06 316 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 CDHR3Q6ZTQ4 885 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 DENND5BQ6ZUT9 1274 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 NLRP9Q7RTR0 991 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 BNIPLQ7Z465 357 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 RFWD2Q8NHY2 731 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 SPATA13Q96N96 652 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 PPP1R10Q96QC0 940 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 SRPK1Q96SB4 655 aaKnown RBP18.62■□□□□ 0.57
VIM-209ENST00000544301 LGMNQ99538 433 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 TSSK1BQ9BXA7 367 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 AP5M1Q9H0R1 490 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 TMPRSS4Q9NRS4 437 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 KANSL3Q9P2N6 904 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 STK38LQ9Y2H1 464 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 PCDHA11Q9Y5I1 949 aa18.62■□□□□ 0.57
VIM-209ENST00000544301 MFSD11O43934 449 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 RFPL1O75677 317 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 CELF2O95319 508 aaKnown RBP18.61■□□□□ 0.57
VIM-209ENST00000544301 IGFBP6P24592 240 aaPredicted RBP18.61■□□□□ 0.57
VIM-209ENST00000544301 TARSP26639 723 aaKnown RBP18.61■□□□□ 0.57
VIM-209ENST00000544301 NOS2P35228 1153 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 BZW1Q7L1Q6 419 aaKnown RBP18.61■□□□□ 0.57
VIM-209ENST00000544301 KCTD13Q8WZ19 329 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 ZFP42Q96MM3 310 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 NPY6RQ99463 290 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 PRDM16Q9HAZ2 1276 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 DCTN4Q9UJW0 460 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 GABRDO14764 452 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 T-ENOLP0DO92 83 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 BGNP21810 368 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 FDFT1P37268 417 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 SERPINB4P48594 390 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 PRKD1Q15139 912 aaPredicted RBP18.61■□□□□ 0.57
VIM-209ENST00000544301 NBPF20Q3BBV1 942 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 CLEC20AQ6ZU45 233 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 CEP57Q86XR8 500 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 RNF139Q8WU17 664 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 LRMDAQ9H2I8 198 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 HAO1Q9UJM8 370 aa18.61■□□□□ 0.57
VIM-209ENST00000544301 SYNJ2BP-COX16A0A087WUM0 186 aa18.6■□□□□ 0.57
VIM-209ENST00000544301 A8MUI8 341 aa18.6■□□□□ 0.57
VIM-209ENST00000544301 HOXC8P31273 242 aa18.6■□□□□ 0.57
VIM-209ENST00000544301 CCNFP41002 786 aa18.6■□□□□ 0.57
VIM-209ENST00000544301 BMPR2Q13873 1038 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms