RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NDUFS2O75306 463 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 NCAM1P13591 858 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 TPMTP51580 245 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 GOLGA8FQ08AF8 430 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 GOLGA8DPQ0D2H9 430 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 ZNF234Q14588 700 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 SLCO6A1Q86UG4 719 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 DENND1CQ8IV53 801 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 NAXDQ8IW45 347 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 SLC4A11Q8NBS3 891 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 PRDM16Q9HAZ2 1276 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 CYP3A43Q9HB55 503 aa16.23■□□□□ 0.19
CLSTN3-213ENST00000541953 CBFA2T3O75081 653 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 FTH1P19P0C7X4 201 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 HLA-EP13747 358 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 RAD23BP54727 409 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 TRIP6Q15654 476 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 ZCWPW2Q504Y3 356 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 DCAF12L1Q5VU92 463 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 PIGZQ86VD9 579 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 MARCH9Q86YJ5 346 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 FAM186BQ8IYM0 893 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 SMYD4Q8IYR2 804 aaPredicted RBP16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 ZNF366Q8N895 744 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 DNASE2BQ8WZ79 361 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 ITM2CQ9NQX7 267 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 CLIC5Q9NZA1 410 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 FNDC3AQ9Y2H6 1198 aaKnown RBP16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 FRMD4BQ9Y2L6 1034 aa16.22■□□□□ 0.19
CLSTN3-213ENST00000541953 ADAMTS20P59510 1910 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 IGSF10Q6WRI0 2623 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 MEI4A8MW99 385 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 MAPK13O15264 365 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 CALUO43852 315 aaPredicted RBP16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 SYPP08247 313 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 SGSHP51688 502 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 NDUFA8P51970 172 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 SCAPQ12770 1279 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 DPYDQ12882 1025 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 NFIL3Q16649 462 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 RAB41Q5JT25 222 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 ANKS1BQ7Z6G8 1248 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 RABEPKQ7Z6M1 372 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 PROSER1Q86XN7 944 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 TMPRSS6Q8IU80 811 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 ZC3H3Q8IXZ2 948 aaKnown RBP16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 ZNF276Q8N554 614 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 C1orf216Q8TAB5 229 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 TATDN2Q93075 761 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 MIR1-1HGQ9H1L0 117 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 GOLPH3LQ9H4A5 285 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 MARCH2Q9P0N8 246 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 LHX6Q9UPM6 363 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 ZDHHC9Q9Y397 364 aa16.21■□□□□ 0.19
CLSTN3-213ENST00000541953 FASNP49327 2511 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 SLC12A8A0AV02 714 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 RHOBTB3O94955 611 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 RALAP11233 206 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 CMA1P23946 247 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 HOXD9P28356 352 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 PSEN1P49768 467 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 STARD3Q14849 445 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 ZNF423Q2M1K9 1284 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 LAYNQ6UX15 382 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 INTS8Q75QN2 995 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 METTL3Q86U44 580 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 FAM124AQ86V42 546 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 FAM217AQ8IXS0 508 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 ADAMTS14Q8WXS8 1223 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 FOXJ1Q92949 421 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 SIPA1Q96FS4 1042 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 HEXIM2Q96MH2 286 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 ULBP1Q9BZM6 244 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 IMPG2Q9BZV3 1241 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 CIPCQ9C0C6 399 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 FAM124BQ9H5Z6 455 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 TMEM8AQ9HCN3 771 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 CISHQ9NSE2 258 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 ELOVL2Q9NXB9 296 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 TOR4AQ9NXH8 423 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 EIF2B4Q9UI10 523 aaKnown RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 PCOLCE2Q9UKZ9 415 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 KNL1Q8NG31 2342 aa16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 TP53BP1Q12888 1972 aaPredicted RBP16.2■□□□□ 0.18
CLSTN3-213ENST00000541953 A0A1B0GTW7 788 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 H0Y626 953 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 ZBTB24O43167 697 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 TSPAN3O60637 253 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 TRIM16O95361 564 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 HLA-FP30511 346 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 YWHAGP61981 247 aaKnown RBP eCLIP16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 WDR45BQ5MNZ6 344 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 SYCP2LQ5T4T6 812 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 LRSAM1Q6UWE0 723 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 BAHD1Q8TBE0 780 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 WFDC5Q8TCV5 224 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 CYB5D2Q8WUJ1 264 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 C6orf106Q9H6K1 298 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 SUSD2Q9UGT4 822 aa16.19■□□□□ 0.18
CLSTN3-213ENST00000541953 BTBD3Q9Y2F9 522 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms