RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	HEY1	Q9Y5J3	304 aa		12.96	□□□□□ -0.33
RNF4-222	ENST00000541204	C2CD4B	A6NLJ0	364 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204		H7C0C1	242 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	PRPSAP2	O60256	369 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	DARS	P14868	501 aa	Known RBP	12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	STIP1	P31948	543 aa	Known RBP	12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	GABRB2	P47870	512 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	ATP5O	P48047	213 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	ATXN1	P54253	815 aa	Known RBP	12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	KRT81	Q14533	505 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	NOMO1	Q15155	1222 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	SOWAHA	Q2M3V2	549 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	CCDC14	Q49A88	953 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	PPP6R3	Q5H9R7	873 aa	Predicted RBP	12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	MDH1B	Q5I0G3	518 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC26A11	Q86WA9	606 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	MAGEB5	Q9BZ81	275 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC13A1	Q9BZW2	595 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	ZNF395	Q9H8N7	513 aa	Predicted RBP	12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	RSAD1	Q9HA92	442 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	ARHGEF4	Q9NR80	690 aa		12.96	□□□□□ -0.34
RNF4-222	ENST00000541204	NRCAM	Q92823	1304 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	RRN3P2	A6NIE6	340 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204		A6NJR5	290 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	SPTLC1	O15269	473 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	RARB	P10826	455 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	CHRM1	P11229	460 aa	Predicted RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	LCP1	P13796	627 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	HUNK	P57058	714 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC34A1	Q06495	639 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	KRT72	Q14CN4	511 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	TTC39B	Q5VTQ0	682 aa	Predicted RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	BEST2	Q8NFU1	509 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	FBXO27	Q8NI29	283 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	ZNF483	Q8TF39	744 aa	Predicted RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	FAM172A	Q8WUF8	416 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	STMN2	Q93045	179 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	FAM136A	Q96C01	138 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	CNPY3	Q9BT09	278 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	HESX1	Q9UBX0	185 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	TTLL3	Q9Y4R7	772 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	SCN1A	P35498	2009 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	CCDC195	A0A1B0GUA6	201 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	GABBR2	O75899	941 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	F2	P00734	622 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	C1QA	P02745	245 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	KIT	P10721	976 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	IGFBP6	P24592	240 aa	Predicted RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	PGM1	P36871	562 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	YWHAZ	P63104	245 aa	Known RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	THOC5	Q13769	683 aa	Known RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	C9orf57	Q5W0N0	161 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	CES4A	Q5XG92	561 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	LRRC74B	Q6ZQY2	392 aa		12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	PDCD7	Q8N8D1	485 aa	Known RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	GNE	Q9Y223	722 aa	Known RBP	12.95	□□□□□ -0.34
RNF4-222	ENST00000541204	SLC15A5	A6NIM6	579 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204		H3BRJ5	948 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	CYB561D2	O14569	222 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	PPP1R12A	O14974	1030 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	KCNN4	O15554	427 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	PAPSS1	O43252	624 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	MAP3K13	O43283	966 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	UGT1A9	O60656	530 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	MYCN	P04198	464 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	ENO1	P06733	434 aa	Known RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	HOXD8	P13378	290 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	AMPD1	P23109	780 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	ERF	P50548	548 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	IRX1	P78414	480 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	MRPS5	P82675	430 aa	Known RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	TMPRSS15	P98073	1019 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	BMPR2	Q13873	1038 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	RCN2	Q14257	317 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	CA9	Q16790	459 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	HSF5	Q4G112	596 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	NDRG1	Q92597	394 aa	Known RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	UGT1A7	Q9HAW7	530 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	UGT1A10	Q9HAW8	530 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	UGT1A8	Q9HAW9	530 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	MARCO	Q9UEW3	520 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	SMIM28	A0A1B0GU29	152 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204		B2RBV5	119 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	CHAD	O15335	359 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	MXRA7	P84157	204 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	SOX4	Q06945	474 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	BST1	Q10588	318 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	SNX17	Q15036	470 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	TAF1C	Q15572	869 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	CST9	Q5W186	159 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	OLFML1	Q6UWY5	402 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	TREML1	Q86YW5	311 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	ARID3B	Q8IVW6	561 aa	Predicted RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	FAM161B	Q96MY7	647 aa		12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	TRIM56	Q9BRZ2	755 aa	Known RBP	12.94	□□□□□ -0.34
RNF4-222	ENST00000541204	USP29	Q9HBJ7	922 aa		12.94	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms