RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CST8O60676 142 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 SLC2A3P11169 496 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 MCM3P25205 808 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 COILP38432 576 aaPredicted RBP18.41■□□□□ 0.54
CLIP1-215ENST00000541108 ARL4AP40617 200 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 CAMK1Q14012 370 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 ANKRD20A8PQ5CZ79 823 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 PPP6R3Q5H9R7 873 aaPredicted RBP18.41■□□□□ 0.54
CLIP1-215ENST00000541108 WDR93Q6P2C0 686 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 CCDC137Q6PK04 289 aaKnown RBP18.41■□□□□ 0.54
CLIP1-215ENST00000541108 DNAJB7Q7Z6W7 309 aaPredicted RBP18.41■□□□□ 0.54
CLIP1-215ENST00000541108 MICAL1Q8TDZ2 1067 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 SLCO2A1Q92959 643 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 DCLK3Q9C098 648 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 SFMBT1Q9UHJ3 866 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 AMACRQ9UHK6 382 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 GBF1Q92538 1859 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 HIDE1A8MVS5 230 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 RAD51CO43502 376 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 GLUD1P00367 558 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 PLPP4Q5VZY2 271 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 KLHDC10Q6PID8 442 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 RFX6Q8HWS3 928 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 TNS4Q8IZW8 715 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 KREMEN2Q8NCW0 462 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.4■□□□□ 0.54
CLIP1-215ENST00000541108 RNF34Q969K3 372 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 ZNF512Q96ME7 567 aaPredicted RBP18.4■□□□□ 0.54
CLIP1-215ENST00000541108 HAPLN3Q96S86 360 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 PARD6BQ9BYG5 372 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 TKTL2Q9H0I9 626 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 OSBPL2Q9H1P3 480 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 EPC1Q9H2F5 836 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 STIM2Q9P246 746 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 RAB21Q9UL25 225 aa18.4■□□□□ 0.54
CLIP1-215ENST00000541108 ZNF840PA6NDX5 716 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 APOC4-APOC2K7ER74 178 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 GRM6O15303 877 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 APOC2P02655 101 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 ZFXP17010 805 aaPredicted RBP18.39■□□□□ 0.53
CLIP1-215ENST00000541108 HCAR3P49019 387 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 TUBP50607 506 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 KPNA1P52294 538 aaPredicted RBP18.39■□□□□ 0.53
CLIP1-215ENST00000541108 DR1Q01658 176 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 MMRN1Q13201 1228 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 MTA1Q13330 715 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 RAB30Q15771 203 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 SLC9A4Q6AI14 798 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 ATL2Q8NHH9 583 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 C1orf54Q8WWF1 131 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 SLC39A13Q96H72 371 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 KCTD15Q96SI1 283 aaPredicted RBP18.39■□□□□ 0.53
CLIP1-215ENST00000541108 TRPM5Q9NZQ8 1165 aa18.39■□□□□ 0.53
CLIP1-215ENST00000541108 DMGDHQ9UI17 866 aaKnown RBP18.39■□□□□ 0.53
CLIP1-215ENST00000541108 YBX2Q9Y2T7 364 aaKnown RBP18.39■□□□□ 0.53
CLIP1-215ENST00000541108 FAM187AA6NFU0 413 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 KCNU1A8MYU2 1149 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 TLR5O60602 858 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 TGM2P21980 687 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 CLCN4P51793 760 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 LMNB2Q03252 620 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 SEMA3BQ13214 749 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 GPM6BQ13491 265 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 PABPC1LQ4VXU2 614 aaKnown RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 SPRED2Q7Z698 418 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 CCDC105Q8IYK2 499 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 PCDH19Q8TAB3 1148 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 GRK7Q8WTQ7 553 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 HDAC7Q8WUI4 952 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 CSPG4P5Q96PW8 444 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 PBX4Q9BYU1 374 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 PLEKHA4Q9H4M7 779 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 ANLNQ9NQW6 1124 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 CWC15Q9P013 229 aaKnown RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 MSRAQ9UJ68 235 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 NUDT5Q9UKK9 219 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 DRG1Q9Y295 367 aaKnown RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 R3HDM2Q9Y2K5 976 aaKnown RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 MTCL1Q9Y4B5 1905 aaKnown RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 H3BRJ5 948 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 I6L893 689 aaPredicted RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 LRG1P02750 347 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 C8AP07357 584 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 SPATA31D3P0C874 917 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 BMP8BP34820 402 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 ATP5C1P36542 298 aaKnown RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 RING1Q06587 406 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 EFEMP1Q12805 493 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 TRIP4Q15650 581 aaPredicted RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 C10orf120Q5SQS8 335 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 HECTD3Q5T447 861 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 ACBD5Q5T8D3 534 aaPredicted RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 TTC27Q6P3X3 843 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 SPATA31D4Q6ZUB0 917 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 PYROXD2Q8N2H3 581 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 PQLC3Q8N755 202 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 NKD2Q969F2 451 aaPredicted RBP18.38■□□□□ 0.53
CLIP1-215ENST00000541108 MARCH2Q9P0N8 246 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 OR12D3Q9UGF7 316 aa18.38■□□□□ 0.53
CLIP1-215ENST00000541108 CEP290O15078 2479 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms