RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 TASP1Q9H6P5 420 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 LZTFL1Q9NQ48 299 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 TRMT1Q9NXH9 659 aaKnown RBP10.99□□□□□ -0.65
VPS33A-204ENST00000540669 ARHGEF38Q9NXL2 777 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 TLR6Q9Y2C9 796 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 PAXBP1Q9Y5B6 917 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 ALG6Q9Y672 507 aa10.99□□□□□ -0.65
VPS33A-204ENST00000540669 GRXCR2A6NFK2 248 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF487B1APH4 448 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF197O14709 1029 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MDM4O15151 490 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 DDX3YO15523 660 aaKnown RBP10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MSI1O43347 362 aaKnown RBP10.98□□□□□ -0.65
VPS33A-204ENST00000540669 PSTPIP1O43586 416 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 PALMO75781 387 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 PRAMEF12O95522 483 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 LATS1O95835 1130 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 TBX18O95935 607 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 RALAP11233 206 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 COMTP21964 271 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 PSMA2P25787 234 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MIPP30301 263 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MARCKSL1P49006 195 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 SULT1E1P49888 294 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 PEX5P50542 639 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 ATXN1P54253 815 aaKnown RBP10.98□□□□□ -0.65
VPS33A-204ENST00000540669 AIF1P55008 147 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 SMAD4Q13485 552 aaKnown RBP10.98□□□□□ -0.65
VPS33A-204ENST00000540669 TEAD2Q15562 447 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 BRMS1LQ5PSV4 323 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MEI1Q5TIA1 1274 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 DAB2IPQ5VWQ8 1189 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 TXNRD3NBQ6F5E7 133 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 VSIG1Q86XK7 387 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 PSTKQ8IV42 348 aaKnown RBP10.98□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF683Q8IZ20 524 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 TEKT4Q8WW24 435 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 TSC1Q92574 1164 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MRPS31Q92665 395 aaKnown RBP10.98□□□□□ -0.65
VPS33A-204ENST00000540669 AZIN2Q96A70 460 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 WDR24Q96S15 920 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 MARCH2Q9P0N8 246 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 CD207Q9UJ71 328 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 DNMT3LQ9UJW3 386 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 GUCA1BQ9UMX6 200 aa10.98□□□□□ -0.65
VPS33A-204ENST00000540669 M0QYT0 321 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 STC2O76061 302 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 F9P00740 461 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 KLKB1P03952 638 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 MYL4P12829 197 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 GJA1P17302 382 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 HOXC13P31276 330 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ATP5C1P36542 298 aaKnown RBP10.97□□□□□ -0.65
VPS33A-204ENST00000540669 MTHFRP42898 656 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ETF1P62495 437 aaKnown RBP10.97□□□□□ -0.65
VPS33A-204ENST00000540669 AMPD2Q01433 879 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ZNF77Q15935 545 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 DPYSL2Q16555 572 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 LEXMQ3ZCV2 418 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 C5orf22Q49AR2 442 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 DCAF12L1Q5VU92 463 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 TXNDC8Q6A555 127 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 TADA2BQ86TJ2 420 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 CMTM8Q8IZV2 173 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 SYCE1Q8N0S2 351 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 CCDC185Q8N715 623 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ALG3Q92685 438 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 KRT35Q92764 455 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 GOLGA1Q92805 767 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 FGF13Q92913 245 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 WBP2Q969T9 261 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 PLD4Q96BZ4 506 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 FAF2Q96CS3 445 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 RSPRY1Q96DX4 576 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ZSWIM3Q96MP5 696 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ASB16Q96NS5 453 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 NECTIN4Q96NY8 510 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 ASB2Q96Q27 587 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 PRMT1Q99873 361 aaKnown RBP10.97□□□□□ -0.65
VPS33A-204ENST00000540669 POMKQ9H5K3 350 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 DDIT4Q9NX09 232 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 GDE1Q9NZC3 331 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 NUDT5Q9UKK9 219 aa10.97□□□□□ -0.65
VPS33A-204ENST00000540669 MRPS23Q9Y3D9 190 aaKnown RBP10.97□□□□□ -0.65
VPS33A-204ENST00000540669 USP15Q9Y4E8 981 aaPredicted RBP10.97□□□□□ -0.65
VPS33A-204ENST00000540669 IGLV3-10A0A075B6K4 115 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 TRAV19A0A0A6YYK7 116 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 C3orf70A6NLC5 250 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 MIF4GDA9UHW6 222 aaKnown RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 CAPN9O14815 690 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 MBTPS2O43462 519 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 FSHRP23945 695 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 PTPN7P35236 360 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 KPNA1P52294 538 aaPredicted RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 RNASE9P60153 205 aaKnown RBP10.96□□□□□ -0.65
VPS33A-204ENST00000540669 ATP11AP98196 1134 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 EFEMP1Q12805 493 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 MESDQ14696 234 aa10.96□□□□□ -0.65
VPS33A-204ENST00000540669 TAF12Q16514 161 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms