RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PHF24Q9UPV7 400 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 MRPS7Q9Y2R9 242 aaKnown RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 ACTL7BQ9Y614 415 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 OXSR1O95747 527 aaPredicted RBP8.98□□□□□ -0.97
YBX3-208ENST00000540447 PCNAP12004 261 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ADD2P35612 726 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 PHKA1P46020 1223 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 NDUFAF6Q330K2 333 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 FAXCQ5TGI0 409 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 LIN54Q6MZP7 749 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 FAM228AQ86W67 206 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 ACMSDQ8TDX5 336 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 MYLPFQ96A32 169 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 VTI1BQ9UEU0 232 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 TMCC3Q9ULS5 477 aa8.98□□□□□ -0.97
YBX3-208ENST00000540447 OR6C70A6NIJ9 312 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 COX4I1P13073 169 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 TBXAS1P24557 533 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 HNF4AP41235 474 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 GRIA3P42263 894 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 MMP13P45452 471 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 FIGNQ5HY92 759 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 STYK1Q6J9G0 422 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 DENND5BQ6ZUT9 1274 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CYP2U1Q7Z449 544 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 FAM71DQ8N9W8 422 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZBTB38Q8NAP3 1195 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 SRPK1Q96SB4 655 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 SYT15Q9BQS2 421 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 PRRG3Q9BZD7 231 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 KLHL1Q9NR64 748 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CMTM6Q9NX76 183 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 GPRC5DQ9NZD1 345 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 PSIP1O75475 530 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 IL32P24001 234 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 TRIM32Q13049 653 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 LRRC24Q50LG9 513 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZNF613Q6PF04 617 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 SYCE2Q6PIF2 218 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CYP4X1Q8N118 509 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 SPATA18Q8TC71 538 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 MYDGFQ969H8 173 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 MTMR8Q96EF0 704 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 FAM129BQ96TA1 746 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 THAP2Q9H0W7 228 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CCDC177Q9NQR7 707 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 DPP3Q9NY33 737 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 PACSIN3Q9UKS6 424 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ERVK-11Q9UQG0 969 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 EFR3BQ9Y2G0 817 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 C12orf71A8MTZ7 269 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 TRIM38O00635 465 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 PDPK1O15530 556 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 TCF4P15884 667 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 TNK2Q07912 1038 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 SURF1Q15526 300 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZYXQ15942 572 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 FITM2Q8N6M3 262 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CPA5Q8WXQ8 436 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 L3MBTL3Q96JM7 780 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 AGAP3Q96P47 875 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CINPQ9BW66 212 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 AS3MTQ9HBK9 375 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 MRPL11Q9Y3B7 192 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 NOL4O94818 638 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CYP19A1P11511 503 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 CYP2C9P11712 490 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 MYL12AP19105 171 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 PTPN7P35236 360 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 SCN1BQ07699 218 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 TSGA10IPQ3SY00 556 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ASPRV1Q53RT3 343 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 FNBP1LQ5T0N5 605 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ANKRD26P1Q6NSI1 321 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ARHGAP27Q6ZUM4 889 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 KRT78Q8N1N4 520 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZNF276Q8N554 614 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ITFG1Q8TB96 612 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 AP3S1Q92572 193 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 CCDC126Q96EE4 140 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 MSANTD3Q96H12 275 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZNF560Q96MR9 790 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ERMAPQ96PL5 475 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 QPCTLQ9NXS2 382 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZNF219Q9P2Y4 722 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 RUVBL2Q9Y230 463 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 REXO2Q9Y3B8 237 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 CNPP09543 421 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 PDGFRBP09619 1106 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 NAT1P18440 290 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ACAT1P24752 427 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 PSMD4P55036 377 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 AQP4P55087 323 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ILF2Q12905 390 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 FAM83EQ2M2I3 478 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ZNF829Q3KNS6 432 aaPredicted RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 USP39Q53GS9 565 aaKnown RBP8.97□□□□□ -0.97
YBX3-208ENST00000540447 SYDE2Q5VT97 1194 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 METTL21CQ5VZV1 264 aa8.97□□□□□ -0.97
YBX3-208ENST00000540447 ARMC8Q8IUR7 673 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms