RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 CPXM2Q8N436 756 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 TTC39CQ8N584 583 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 RBBP8NLQ8NC74 664 aaPredicted RBP8.86□□□□□ -0.99
USP28-203ENST00000537490 CEP76Q8TAP6 659 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 UBA3Q8TBC4 463 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 ERCC4Q92889 916 aaPredicted RBP8.86□□□□□ -0.99
USP28-203ENST00000537490 PIWIL1Q96J94 861 aaKnown RBP8.86□□□□□ -0.99
USP28-203ENST00000537490 HSPA12BQ96MM6 686 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 GTPBP2Q9BX10 602 aaKnown RBP8.86□□□□□ -0.99
USP28-203ENST00000537490 TMEM121BQ9BXQ6 578 aaPredicted RBP8.86□□□□□ -0.99
USP28-203ENST00000537490 MKRN2Q9H000 416 aaKnown RBP8.86□□□□□ -0.99
USP28-203ENST00000537490 TSPAN16Q9UKR8 245 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 STRIP2Q9ULQ0 834 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 ATP6V1DQ9Y5K8 247 aa8.86□□□□□ -0.99
USP28-203ENST00000537490 ASCC3Q8N3C0 2202 aaKnown RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 SPAARA0A1B0GVQ0 90 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 TRIM49BA6NDI0 452 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 KCNJ18B7U540 433 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ARHGAP33O14559 1287 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 XPO1O14980 1071 aaKnown RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 TSPAN3O60637 253 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 NDUFS2O75306 463 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 GABBR2O75899 941 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ZBED1O96006 694 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 CYBBP04839 570 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 FAM193AP78312 1265 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 FKBP3Q00688 224 aaKnown RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 CUL2Q13617 745 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ZNF234Q14588 700 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 STARD3Q14849 445 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 TRIP4Q15650 581 aaPredicted RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 COBLL1Q53SF7 1204 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 SGO2Q562F6 1265 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ZNF658Q5TYW1 1059 aaPredicted RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 BSPRYQ5W0U4 402 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 TMEM215Q68D42 235 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 UNQ6494/PRO21346Q6UXR6 183 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 METTL3Q86U44 580 aaKnown RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 TMPRSS6Q8IU80 811 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 FMNL3Q8IVF7 1028 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 FAM217AQ8IXS0 508 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 RGL4Q8IZJ4 473 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 MINDY1Q8N5J2 469 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 UBR7Q8N806 425 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ENGASEQ8NFI3 743 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 DDI1Q8WTU0 396 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 SORCS1Q8WY21 1168 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 EDEM1Q92611 657 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 TOE1Q96GM8 510 aaKnown RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 TSG101Q99816 390 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 SCNM1Q9BWG6 230 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 SLC32A1Q9H598 525 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 FAM124BQ9H5Z6 455 aaPredicted RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 PRDM16Q9HAZ2 1276 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 LRRC4Q9HBW1 653 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ITM2CQ9NQX7 267 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 RMND1Q9NWS8 449 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 ELOVL2Q9NXB9 296 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 WSB2Q9NYS7 404 aaPredicted RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 USP36Q9P275 1121 aaKnown RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 SFMBT1Q9UHJ3 866 aa8.85□□□□□ -0.99
USP28-203ENST00000537490 KMT2BQ9UMN6 2715 aaPredicted RBP8.85□□□□□ -0.99
USP28-203ENST00000537490 MYH10P35580 1976 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 YJEFN3A6XGL0 299 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 UPK3BL1B0FP48 263 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 UPK3BL2E5RIL1 263 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 E7ENQ6 273 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 RNF225M0QZC1 329 aaPredicted RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 O00370 1275 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 SLC16A3O15427 465 aaKnown RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 HYAL3O43820 417 aaPredicted RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 OPHN1O60890 802 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 VDRP11473 427 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 CD59P13987 128 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 CD19P15391 556 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 PRKCHP24723 683 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 CD6P30203 668 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 COPAP53621 1224 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 BCAT1P54687 386 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 SLC8A3P57103 927 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 SIM1P81133 766 aaPredicted RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 ADIGQ0VDE8 80 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 BST2Q10589 180 aaKnown RBP8.84□□□□□ -0.99
USP28-203ENST00000537490 CACNA1EQ15878 2313 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 PKDCCQ504Y2 493 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 ISM2Q6H9L7 571 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 ANKS1BQ7Z6G8 1248 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 RABEPKQ7Z6M1 372 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 HDDC3Q8N4P3 179 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 SPATA20Q8TB22 786 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 UCMAQ8WVF2 138 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 TFAP2BQ92481 460 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 SLC35C1Q96A29 364 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 PLD4Q96BZ4 506 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 CCDC34Q96HJ3 373 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 GSDMAQ96QA5 445 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 ZSWIM1Q9BR11 485 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 GPR174Q9BXC1 333 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 SLC2A11Q9BYW1 496 aa8.84□□□□□ -0.99
USP28-203ENST00000537490 ADAM33Q9BZ11 813 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms