RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TNFRSF8P28908 595 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 STIP1P31948 543 aaKnown RBP16.6■□□□□ 0.25
NUP54-214ENST00000514307 HTR7P34969 479 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 PTGIRP43119 386 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 USP46P62068 366 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 SNX30Q5VWJ9 437 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 ZDHHC14Q8IZN3 488 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 TTC9BQ8N6N2 239 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 CCDC185Q8N715 623 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 HDAC7Q8WUI4 952 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 IFT81Q8WYA0 676 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 NKD2Q969F2 451 aaPredicted RBP16.6■□□□□ 0.25
NUP54-214ENST00000514307 HAUS1Q96CS2 278 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 TRMT2BQ96GJ1 504 aaKnown RBP16.6■□□□□ 0.25
NUP54-214ENST00000514307 KLHL5Q96PQ7 755 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 PNKPQ96T60 521 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 FERMT1Q9BQL6 677 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 TKTL2Q9H0I9 626 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 NMUR1Q9HB89 426 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 WDR6Q9NNW5 1121 aaKnown RBP16.6■□□□□ 0.25
NUP54-214ENST00000514307 ENTPD7Q9NQZ7 604 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.6■□□□□ 0.25
NUP54-214ENST00000514307 GPATCH2LQ9NWQ4 482 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 TLR6Q9Y2C9 796 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 PCDHA11Q9Y5I1 949 aa16.6■□□□□ 0.25
NUP54-214ENST00000514307 FNDC1Q4ZHG4 1894 aaPredicted RBP16.6■□□□□ 0.25
NUP54-214ENST00000514307 LTBP2Q14767 1821 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 LINC01553A4QN01 128 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 LIASO43766 372 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 IGLV3-25P01717 112 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ITGAVP06756 1048 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 CD48P09326 243 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ZDHHC11BP0C7U3 371 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 LINC00271P0C7V0 271 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 IL4RP24394 825 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ATP5C1P36542 298 aaKnown RBP16.59■□□□□ 0.25
NUP54-214ENST00000514307 ATXN1P54253 815 aaKnown RBP16.59■□□□□ 0.25
NUP54-214ENST00000514307 NNTQ13423 1086 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 C10orf120Q5SQS8 335 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 TAC4Q86UU9 113 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 JAMLQ86YT9 394 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ELMOD1Q8N336 334 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 CCDC89Q8N998 374 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 BBOF1Q8ND07 529 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ADAM32Q8TC27 787 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 SPPL3Q8TCT6 385 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 AUTS2Q8WXX7 1259 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 FAF2Q96CS3 445 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 C1orf74Q96LT6 269 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ZNF512Q96ME7 567 aaPredicted RBP16.59■□□□□ 0.25
NUP54-214ENST00000514307 EPAS1Q99814 870 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 TCF25Q9BQ70 676 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 FAM129AQ9BZQ8 928 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ARHGEF38Q9NXL2 777 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 DONSONQ9NYP3 566 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 DPP7Q9UHL4 492 aa16.59■□□□□ 0.25
NUP54-214ENST00000514307 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 EEF2KO00418 725 aaKnown RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 MCF2LO15068 1137 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 IRAK2O43187 625 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ATF6P18850 670 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ITIH2P19823 946 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 KCNJ1P48048 391 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 VCPP55072 806 aaKnown RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 TBX4P57082 545 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 EIF3EP60228 445 aaKnown RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 VSNL1P62760 191 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 DYNLT1P63172 113 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 PITX1P78337 314 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 MMRN1Q13201 1228 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 XRCC4Q13426 336 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 EIF4EBP2Q13542 120 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 MTMR3Q13615 1198 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 TRIP4Q15650 581 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 CA9Q16790 459 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 HECTD3Q5T447 861 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 OTUD1Q5VV17 481 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 SLC9A4Q6AI14 798 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 TTC27Q6P3X3 843 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 LILRA6Q6PI73 481 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ELMSAN1Q6PJG2 1045 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ANKS1BQ7Z6G8 1248 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 DNAJB7Q7Z6W7 309 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 PLD5Q8N7P1 536 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ATP6V0D2Q8N8Y2 350 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 PCDH19Q8TAB3 1148 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 POF1BQ8WVV4 589 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 CCDC114Q96M63 670 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 CSPG4P5Q96PW8 444 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 TGS1Q96RS0 853 aaKnown RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 KCTD15Q96SI1 283 aaPredicted RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 HERPUD2Q9BSE4 406 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ADAM33Q9BZ11 813 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 NACA2Q9H009 215 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 ALG13Q9NP73 1137 aaKnown RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 MTMR10Q9NXD2 777 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 CWC15Q9P013 229 aaKnown RBP16.58■□□□□ 0.24
NUP54-214ENST00000514307 MARCH2Q9P0N8 246 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 CALCOCO1Q9P1Z2 691 aa16.58■□□□□ 0.24
NUP54-214ENST00000514307 PCDH10Q9P2E7 1040 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms