RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 C7orf25Q9BPX7 421 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 BTBD10Q9BSF8 475 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 ACAT2Q9BWD1 397 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 STN1Q9H668 368 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 HMX1Q9NP08 348 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SPATA7Q9P0W8 599 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 PLAGL2Q9UPG8 496 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 RBM47A0AV96 593 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 PPP1R3GB7ZBB8 358 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 CST8O60676 142 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 FARP2O94887 1054 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 MYL2P10916 166 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 TGFBR2P37173 567 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 MAGEA8P43361 318 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 CCR3P51677 355 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 NCKAP1LP55160 1127 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 USP46P62068 366 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 MAPK7Q13164 816 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SPDYAQ5MJ70 313 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SLC25A24Q6NUK1 477 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 EIF3MQ7L2H7 374 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SETD9Q8NE22 299 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SPATA18Q8TC71 538 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SCFD1Q8WVM8 642 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 HES6Q96HZ4 224 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 PHF20Q9BVI0 1012 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 MYLK2Q9H1R3 596 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 TDRD3Q9H7E2 651 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 ANKZF1Q9H8Y5 726 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 RAVER2Q9HCJ3 691 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 PDS5AQ29RF7 1337 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 DFFAO00273 331 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 HAT1O14929 419 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SYNCRIPO60506 623 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM20BO75063 409 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ASS1P00966 412 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RALAP11233 206 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TFE3P19532 575 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 CCNA2P20248 432 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 S100A2P29034 98 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 PDIA5Q14554 519 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SNX17Q15036 470 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RASA2Q15283 850 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 DUOXA2Q1HG44 320 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SMTNL2Q2TAL5 461 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SULT1C3Q6IMI6 304 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ERO1BQ86YB8 467 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TTC39CQ8N584 583 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SGF29Q96ES7 293 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 REEP2Q9BRK0 252 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RNF146Q9NTX7 359 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ABCG2Q9UNQ0 655 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TRPC5OSA6NMA1 111 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 EYA4O95677 639 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ENO2P09104 434 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ACOT2P49753 483 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 PSMD4P55036 377 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TAP1Q03518 808 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 DDR2Q16832 855 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 CCSAPQ6IQ19 270 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 CHMP1BQ7LBR1 199 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SPAG16Q8N0X2 631 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 IGDCC4Q8TDY8 1250 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SOCS4Q8WXH5 440 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ATG4AQ8WYN0 398 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM169Q96HH4 297 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 PLEKHA5Q9HAU0 1116 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 A0A0B4J269 797 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM88BA6NKF7 163 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 STX11O75558 287 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 GRAP2O75791 330 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 CTDNEP1O95476 244 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 GH1P01241 217 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 MYBP10242 640 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 LCP1P13796 627 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 ATP6V1B2P21281 511 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RGS7P49802 495 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TUBB3Q13509 450 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RBM20Q5T481 1227 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 TTC23LQ6PF05 361 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 IZUMO1Q8IYV9 350 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RAB42Q8N4Z0 105 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 PTPRN2Q92932 1015 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 MMTAG2Q9BU76 263 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 RNF208Q9H0X6 261 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 POLR3FQ9H1D9 316 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SP140LQ9H930 580 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 HPS4Q9NQG7 708 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 PCDHB8Q9UN66 801 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 DMTF1Q9Y222 760 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 PCDHB12Q9Y5F1 795 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 A0A1W2PQJ5 194 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 F5H6K3 240 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 SASH3O75995 380 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 GLI1P08151 1106 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 CPB1P15086 417 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 CCT8P50990 548 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 GEMIN4P57678 1058 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 HSF2Q03933 536 aa8.95□□□□□ -0.98
LIMCH1-218ENST00000513024 KLRC3Q07444 240 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms