RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PTPRBP23467 1997 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 PSMC2P35998 433 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 DPYDQ12882 1025 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 ADAM9Q13443 819 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 STARD3Q14849 445 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 RSRC2Q7L4I2 434 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 TADA2BQ86TJ2 420 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 PIGZQ86VD9 579 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 CHCHD4Q8N4Q1 142 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 ZCCHC9Q8N567 271 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 KDF1Q8NAX2 398 aaPredicted RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 SLC4A11Q8NBS3 891 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 ZCCHC14Q8WYQ9 949 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 TATDN2Q93075 761 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 TOE1Q96GM8 510 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 GPR174Q9BXC1 333 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 MKRN2Q9H000 416 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 MIR1-1HGQ9H1L0 117 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 GOLPH3LQ9H4A5 285 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 PRDM16Q9HAZ2 1276 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 TMEM8AQ9HCN3 771 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 CISHQ9NSE2 258 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 MARCH2Q9P0N8 246 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 AGO1Q9UL18 857 aaKnown RBP13.26□□□□□ -0.29
SKA1-205ENST00000494518 USP3Q9Y6I4 520 aa13.26□□□□□ -0.29
SKA1-205ENST00000494518 A0A1W2PQD8 194 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 KCNJ18B7U540 433 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 TULP2O00295 520 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 SH3BP5O60239 455 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 TSPAN3O60637 253 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 PENKP01210 267 aaPredicted RBP13.25□□□□□ -0.29
SKA1-205ENST00000494518 MYL1P05976 194 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 SYPP08247 313 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 PRKCHP24723 683 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 CD6P30203 668 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 PSEN1P49768 467 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 MXI1P50539 228 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 RAD23BP54727 409 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 YWHAGP61981 247 aaKnown RBP eCLIP13.25□□□□□ -0.29
SKA1-205ENST00000494518 KRT85P78386 507 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 GRIK2Q13002 908 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 ZNF234Q14588 700 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 KRT39Q6A163 491 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 ANKS1BQ7Z6G8 1248 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 RABEPKQ7Z6M1 372 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 ZNF419Q96HQ0 510 aaPredicted RBP13.25□□□□□ -0.29
SKA1-205ENST00000494518 CIPCQ9C0C6 399 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 CLIC5Q9NZA1 410 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 FBXO10Q9UK96 956 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 ZDHHC9Q9Y397 364 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 APC2O95996 2303 aa13.25□□□□□ -0.29
SKA1-205ENST00000494518 MUC22E2RYF6 1773 aaPredicted RBP13.25□□□□□ -0.29
SKA1-205ENST00000494518 NBEAQ8NFP9 2946 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 CELSR3Q9NYQ7 3312 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 SRRM3A6NNA2 597 aaPredicted RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 GFRA2O00451 464 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 SYNCRIPO60506 623 aaKnown RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 NCAM1P13591 858 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 HLA-EP13747 358 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 RPL13P26373 211 aaKnown RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 TKTL1P51854 596 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 COG7P83436 770 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 NFIL3Q16649 462 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 GOLGA7BQ2TAP0 167 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 ZCWPW2Q504Y3 356 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 DCAF17Q5H9S7 520 aaPredicted RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 WDR45BQ5MNZ6 344 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 SYCP2LQ5T4T6 812 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 KRBA2Q6ZNG9 492 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 FAM124AQ86V42 546 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 GUF1Q8N442 669 aaKnown RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 ZNF366Q8N895 744 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 PNPLA1Q8N8W4 532 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 DDI1Q8WTU0 396 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 UCMAQ8WVF2 138 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 SLC39A7Q92504 469 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 TMEM176AQ96HP8 235 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 CDK5RAP1Q96SZ6 601 aaKnown RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 ULBP1Q9BZM6 244 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 DCLK3Q9C098 648 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 DNAI2Q9GZS0 605 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 GDPD2Q9HCC8 539 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 DNAAF2Q9NVR5 837 aaKnown RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 WSB2Q9NYS7 404 aaPredicted RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 THAP10Q9P2Z0 257 aaPredicted RBP13.24□□□□□ -0.29
SKA1-205ENST00000494518 METRNQ9UJH8 293 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 STRIP2Q9ULQ0 834 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 ZNF510Q9Y2H8 683 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 SLC27A6Q9Y2P4 619 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 NEUROG3Q9Y4Z2 214 aa13.24□□□□□ -0.29
SKA1-205ENST00000494518 FASNP49327 2511 aaKnown RBP13.23□□□□□ -0.29
SKA1-205ENST00000494518 ITPR1Q14643 2758 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 UPK3BL1B0FP48 263 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 UPK3BL2E5RIL1 263 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 ATMINO43313 823 aaPredicted RBP13.23□□□□□ -0.29
SKA1-205ENST00000494518 CYBBP04839 570 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 EPHX1P07099 455 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 HOXB3P14651 431 aaPredicted RBP13.23□□□□□ -0.29
SKA1-205ENST00000494518 GNSP15586 552 aa13.23□□□□□ -0.29
SKA1-205ENST00000494518 CHKAP35790 457 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms