RNA–Protein interactions for RNA: ENST00000494465.5

ATG4B-225, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 2,365 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-225ENST00000494465 MICAL3Q7RTP6 2002 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 FAM72CH0Y354 149 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 SYN3O14994 580 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 TRAPPC3O43617 180 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 BANF1O75531 89 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 ABHD2P08910 425 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 SLC5A3P53794 718 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 ATN1P54259 1190 aaPredicted RBP17.13■□□□□ 0.33
ATG4B-225ENST00000494465 DPYSQ14117 519 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 KCNJ11Q14654 390 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 HIF1AQ16665 826 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 SLC45A4Q5BKX6 768 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 EFHC2Q5JST6 749 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 VARS2Q5ST30 1063 aaKnown RBP17.13■□□□□ 0.33
ATG4B-225ENST00000494465 FAM72AQ5TYM5 149 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 FAM72DQ6L9T8 149 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 ANKRD33Q7Z3H0 272 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 FAM72BQ86X60 149 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 CCDC33Q8N5R6 958 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 WDR83Q9BRX9 315 aaKnown RBP17.13■□□□□ 0.33
ATG4B-225ENST00000494465 ADAM28Q9UKQ2 775 aa17.13■□□□□ 0.33
ATG4B-225ENST00000494465 E7ESA3 106 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 RGS16O15492 202 aaPredicted RBP17.12■□□□□ 0.33
ATG4B-225ENST00000494465 DGKIO75912 1065 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 CXCL10P02778 98 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 CXCR3P49682 368 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 PGFP49763 221 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 PPP2R2AP63151 447 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 BASP1P80723 227 aaKnown RBP17.12■□□□□ 0.33
ATG4B-225ENST00000494465 EIF4EBP2Q13542 120 aaPredicted RBP17.12■□□□□ 0.33
ATG4B-225ENST00000494465 MRPL58Q14197 206 aaKnown RBP17.12■□□□□ 0.33
ATG4B-225ENST00000494465 GLIPR1L2Q4G1C9 344 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 HP1BP3Q5SSJ5 553 aaPredicted RBP17.12■□□□□ 0.33
ATG4B-225ENST00000494465 KCNT2Q6UVM3 1135 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 CENPUQ71F23 418 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 BEND5Q7L4P6 421 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 QKIQ96PU8 341 aaKnown RBP eCLIP17.12■□□□□ 0.33
ATG4B-225ENST00000494465 COLEC11Q9BWP8 271 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 GPR62Q9BZJ7 368 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 PRDM16Q9HAZ2 1276 aa17.12■□□□□ 0.33
ATG4B-225ENST00000494465 H3BRJ5 948 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 MFSD11O43934 449 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 AGTP01019 485 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 IGLV3-25P01717 112 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 GRIK1P39086 918 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 GNGT1P63211 74 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 FAAP100Q0VG06 881 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 PDIA2Q13087 525 aaKnown RBP17.11■□□□□ 0.33
ATG4B-225ENST00000494465 TAC4Q86UU9 113 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 CDKL3Q8IVW4 592 aaPredicted RBP17.11■□□□□ 0.33
ATG4B-225ENST00000494465 SERPINB12Q96P63 405 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.11■□□□□ 0.334e-14■■□□□ 13.9
ATG4B-225ENST00000494465 PAK5Q9P286 719 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 PLXNA3P51805 1871 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 SMAPO00193 183 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 CREB3O43889 395 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 F9P00740 461 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 ACTN2P35609 894 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 SLC11A1P49279 550 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 GUCY1A3Q02108 690 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 SLC39A5Q6ZMH5 540 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 FAM43BQ6ZT52 329 aaPredicted RBP17.11■□□□□ 0.33
ATG4B-225ENST00000494465 RFX8Q6ZV50 586 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 CCDC13Q8IYE1 715 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 ZBED8Q8IZ13 594 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 ARFGAP2Q8N6H7 521 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 TTC25Q96NG3 672 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 HIPK3Q9H422 1215 aa17.11■□□□□ 0.33
ATG4B-225ENST00000494465 ABI2Q9NYB9 513 aaPredicted RBP17.11■□□□□ 0.33
ATG4B-225ENST00000494465 XPO7Q9UIA9 1087 aaKnown RBP17.11■□□□□ 0.33
ATG4B-225ENST00000494465 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.11■□□□□ 0.33
ATG4B-225ENST00000494465 SF3B1O75533 1304 aaKnown RBP eCLIP17.1■□□□□ 0.337e-7■■■■□ 20.8
ATG4B-225ENST00000494465 DCLK1O15075 740 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 MDH1P40925 334 aaKnown RBP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 CCL23P55773 120 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 ARL4CP56559 192 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 FAM171A1Q5VUB5 890 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 LRRC31Q6UY01 552 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 NPAS4Q8IUM7 802 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 DCP1BQ8IZD4 617 aaKnown RBP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 CCDC110Q8TBZ0 833 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 DQX1Q8TE96 717 aaKnown RBP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 B3GALT6Q96L58 329 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 RAB6BQ9NRW1 208 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 EURLQ9NYK6 297 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 CTNNAL1Q9UBT7 734 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 LRFN2Q9ULH4 789 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 ZMYND8Q9ULU4 1186 aaPredicted RBP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 CLUHO75153 1309 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 EEF2KO00418 725 aaKnown RBP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 CHADO15335 359 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 EIF3HO15372 352 aaKnown RBP eCLIP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 GCATO75600 419 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 VAV1P15498 845 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 FGFR3P22607 806 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 PAFAH1B3Q15102 231 aaKnown RBP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 SCD5Q86SK9 330 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 NETO2Q8NC67 525 aa17.1■□□□□ 0.33
ATG4B-225ENST00000494465 FUBP3Q96I24 572 aaKnown RBP eCLIP17.1■□□□□ 0.33
ATG4B-225ENST00000494465 ALDH2P05091 517 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms