RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 KLRG2A4D1S0 409 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 TPBGLP0DKB5 382 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 ANPEPP15144 967 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 TBL3Q12788 808 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 LBRQ14739 615 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 TTC33Q6PID6 262 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 RIPOR1Q6ZS17 1223 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 SLFN11Q7Z7L1 901 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 MIB1Q86YT6 1006 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 LZICQ8WZA0 190 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF317Q96PQ6 595 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 RRAGCQ9HB90 399 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 KCNH4Q9UQ05 1017 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 CDY2AQ9Y6F7 541 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 CDY1Q9Y6F8 540 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 SMAPO00193 183 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 C2CD2LO14523 706 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 RECQL4O94761 1208 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 IL10P22301 178 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 YWHAHQ04917 246 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 PDK2Q15119 407 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 LPCAT2Q7L5N7 544 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 SLC26A11Q86WA9 606 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 ZCCHC9Q8N567 271 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 NLGN2Q8NFZ4 835 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 ACO2Q99798 780 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 DCUN1D5Q9BTE7 237 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 RPL26L1Q9UNX3 145 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 DUOX1Q9NRD9 1551 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 TPST1O60507 370 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 FARP2O94887 1054 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 KCNA2P16389 499 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 KHDC1Q4VXA5 237 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 CLNKQ7Z7G1 428 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 ADAM32Q8TC27 787 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 LRRC15Q8TF66 581 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 EDEM1Q92611 657 aa16.77■□□□□ 0.28
CCDC88B-209ENST00000494080 NCANO14594 1321 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 RTN3O95197 1032 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 FAM58BPP0C7Q3 252 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 HSPA13P48723 471 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 PLOD1Q02809 727 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 LAYNQ6UX15 382 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 LBX2Q6XYB7 198 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 B3GNT6Q6ZMB0 384 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 SLC2A14Q8TDB8 520 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 PTPRN2Q92932 1015 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 ECSITQ9BQ95 431 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 PIH1D1Q9NWS0 290 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 ATXN10Q9UBB4 475 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 MRPL42Q9Y6G3 142 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 C5P01031 1676 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 MROH7Q68CQ1 1323 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 E9PBE3 544 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 KLHL41O60662 606 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 PROCP04070 461 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 PYGLP06737 847 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 TKTL1P51854 596 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 BST2Q10589 180 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 C15orf59Q2T9L4 293 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 GPR141Q7Z602 305 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 SRPK1Q96SB4 655 aaKnown RBP16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 LRRC19Q9H756 370 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 ARL8BQ9NVJ2 186 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 PKD2L2Q9NZM6 624 aa16.77■□□□□ 0.27
CCDC88B-209ENST00000494080 MAN1A2O60476 641 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 FCGRTP55899 365 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 RPL10AP62906 217 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ZBTB41Q5SVQ8 909 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 TRABD2AQ86V40 505 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 HOMEZQ8IX15 550 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 UCMAQ8WVF2 138 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 WNK4Q96J92 1243 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 NR1H4Q96RI1 486 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ADNPQ9H2P0 1102 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 PCDH9Q9HC56 1237 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 DDX43Q9NXZ2 648 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 PPME1Q9Y570 386 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 GPR182O15218 404 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ETFBP38117 255 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ADIGQ0VDE8 80 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ADRM1Q16186 407 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ASTE1Q2TB18 679 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 TRIM16LQ309B1 348 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 MTHFD1LQ6UB35 978 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 USP50Q70EL3 339 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 OR6Y1Q8NGX8 325 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 TINF2Q9BSI4 451 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 PALMDQ9NP74 551 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 TCRBV7S2A1N4TA0A589 114 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 GSC2O15499 205 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 DDX3YO15523 660 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 CYP1A2P05177 515 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ATXN8OSP0DMR3 200 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ODC1P11926 461 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ETS1P14921 441 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 MFSD10Q14728 455 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 ZCCHC23Q6ZST2 131 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 IFNEQ86WN2 208 aa16.76■□□□□ 0.27
CCDC88B-209ENST00000494080 RNF148Q8N7C7 305 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms