RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 AGAP3Q96P47 875 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 ZNF670Q9BS34 389 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 MED10Q9BTT4 135 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 FRMD8P1Q9BZ68 369 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-220ENST00000492280 USH1CQ9Y6N9 552 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 IQCA1LA6NCM1 817 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 PTGESO14684 152 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 NRP1O14786 923 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 MDM4O15151 490 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 STAU1O95793 577 aaKnown RBP12.88□□□□□ -0.35
HMGN1-220ENST00000492280 T-ENOLP0DO92 83 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 MLH1P40692 756 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 LILRA4P59901 499 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 MRPS5P82675 430 aaKnown RBP12.88□□□□□ -0.35
HMGN1-220ENST00000492280 SETDB1Q15047 1291 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 DPYSL2Q16555 572 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 ASRGL1Q7L266 308 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 SLC26A9Q7LBE3 791 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 WNT8BQ93098 351 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 APOPT1Q96IL0 206 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 TSSK1BQ9BXA7 367 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 MORF4L1Q9UBU8 362 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 KIAA1257Q9ULG3 409 aa12.88□□□□□ -0.35
HMGN1-220ENST00000492280 NRCAMQ92823 1304 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 IQANK1A0A1B0GTG1 560 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 HMX2A2RU54 273 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 CFAP69A5D8W1 941 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 COPEO14579 308 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 ETV4P43268 484 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 CPA2P48052 419 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 TAF6P49848 677 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PGGT1BP53609 377 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 IFRD2Q12894 506 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-220ENST00000492280 SLC45A4Q5BKX6 768 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 C16orf46Q6P387 395 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 APBB1IPQ7Z5R6 666 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-220ENST00000492280 SPNS2Q8IVW8 549 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 LRRC52Q8N7C0 313 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 C11orf84Q9BUA3 381 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-220ENST00000492280 ARHGEF4Q9NR80 690 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 ARHGEF3Q9NR81 526 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 KRT82Q9NSB4 513 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PIGVQ9NUD9 493 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.87□□□□□ -0.35
HMGN1-220ENST00000492280 GNEQ9Y223 722 aaKnown RBP12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PSAT1Q9Y617 370 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 FAM237BA0A1B0GVD1 139 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 CASTOR2A6NHX0 329 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 H0Y3Z8 333 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 M0QYT0 321 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 HUS1O60921 280 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PSMB4P28070 264 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 SERPINB3P29508 390 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 NUMBP49757 651 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PSEN2P49810 448 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 NEK3P51956 506 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 KYAT1Q16773 422 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 SH2D5Q6ZV89 423 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PAQR9Q6ZVX9 377 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 SLC26A11Q86WA9 606 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 C3orf58Q8NDZ4 430 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 STKLD1Q8NE28 680 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 TEKT4Q8WW24 435 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 EDEM1Q92611 657 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 SIGLEC10Q96LC7 697 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 IQCGQ9H095 443 aaKnown RBP12.87□□□□□ -0.35
HMGN1-220ENST00000492280 PLEKHA5Q9HAU0 1116 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 ZFP69BQ9UJL9 534 aa12.87□□□□□ -0.35
HMGN1-220ENST00000492280 BCLAF3A2AJT9 711 aaKnown RBP12.86□□□□□ -0.35
HMGN1-220ENST00000492280 HOXD8P13378 290 aaPredicted RBP12.86□□□□□ -0.35
HMGN1-220ENST00000492280 SERPINB4P48594 390 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 STILQ15468 1287 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 FAM110CQ1W6H9 321 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 ARHGAP17Q68EM7 881 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 ALYREFQ86V81 257 aaKnown RBP12.86□□□□□ -0.35
HMGN1-220ENST00000492280 NT5DC4Q86YG4 428 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 HACE1Q8IYU2 909 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 GAD1Q99259 594 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 PARK7Q99497 189 aaKnown RBP12.86□□□□□ -0.35
HMGN1-220ENST00000492280 APOL2Q9BQE5 337 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 HEY2Q9UBP5 337 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 RNF103O00237 685 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 APOEP02649 317 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 MGAT1P26572 445 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 ANKRD20A2Q5SQ80 823 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 ANKRD20A1Q5TYW2 823 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 ANKRD20A3Q5VUR7 823 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 SPRYD7Q5W111 196 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 IQSEC1Q6DN90 963 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 CLEC20AQ6ZU45 233 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 SLC7A14Q8TBB6 771 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 HTR3CQ8WXA8 447 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 SLC7A6OSQ96CW6 309 aaPredicted RBP12.86□□□□□ -0.35
HMGN1-220ENST00000492280 TMEM120AQ9BXJ8 343 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 C20orf27Q9GZN8 174 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 CYLDQ9NQC7 956 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 USP3Q9Y6I4 520 aa12.86□□□□□ -0.35
HMGN1-220ENST00000492280 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.85□□□□□ -0.35
HMGN1-220ENST00000492280 MYBPHLA2RUH7 354 aa12.85□□□□□ -0.35
HMGN1-220ENST00000492280 MBLAC1A4D2B0 266 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms