RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CD300LGQ6UXG3 332 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 NPNTQ6UXI9 565 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 CPLX4Q7Z7G2 160 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 ZNF598Q86UK7 904 aaKnown RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 CLEC4CQ8WTT0 213 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 ALKBH8Q96BT7 664 aaKnown RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 GRAMD1AQ96CP6 724 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 PGBD4Q96DM1 585 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 KCTD15Q96SI1 283 aaPredicted RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 GAD1Q99259 594 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 CYTH2Q99418 400 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 SYT15Q9BQS2 421 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 PLCD4Q9BRC7 762 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 TRIM62Q9BVG3 475 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 KLC2Q9H0B6 622 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 BRD8Q9H0E9 1235 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 AGO3Q9H9G7 860 aaKnown RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 POPDC2Q9HBU9 364 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 EIF2B3Q9NR50 452 aaKnown RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 ETNK2Q9NVF9 386 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 DNAJC17Q9NVM6 304 aaKnown RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 MIOSQ9NXC5 875 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 DDX43Q9NXZ2 648 aaKnown RBP11.13□□□□□ -0.63
USP4-214ENST00000491791 PADI3Q9ULW8 664 aa11.13□□□□□ -0.63
USP4-214ENST00000491791 RASA4BC9J798 803 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 KBTBD13C9JR72 458 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 H3BRJ5 948 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 KCNN4O15554 427 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 RASA4O43374 803 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 TYROBPO43914 113 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 BEST1O76090 585 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ASMTLO95671 621 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 F9P00740 461 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 FYNP06241 537 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ASGR1P07306 291 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 LCP1P13796 627 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 CREB1P16220 341 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 RBL1P28749 1068 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 MLH1P40692 756 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 GLUD2P49448 558 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ATN1P54259 1190 aaPredicted RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 FAM189BP81408 668 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ADIGQ0VDE8 80 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 SLC10A2Q12908 348 aaPredicted RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 DPYSQ14117 519 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 PRKD1Q15139 912 aaPredicted RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 FAM109BQ6ICB4 259 aaPredicted RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 C1orf228Q6PIY5 440 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 C3orf62Q6ZUJ4 267 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 FAM35AQ86V20 835 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 CCDC13Q8IYE1 715 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 LRRC34Q8IZ02 419 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 CCDC185Q8N715 623 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ANKS4BQ8N8V4 417 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 PPP1R13LQ8WUF5 828 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 SMARCD1Q96GM5 515 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 SMOQ99835 787 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 PRMT1Q99873 361 aaKnown RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 RTP3Q9BQQ7 232 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 TSEN34Q9BSV6 310 aaKnown RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 SEZ6LQ9BYH1 1024 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 KDM4CQ9H3R0 1056 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 DHX35Q9H5Z1 703 aaKnown RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 ACTR5Q9H9F9 607 aaPredicted RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 VPS37BQ9H9H4 285 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 LRRC4Q9HBW1 653 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 XAB2Q9HCS7 855 aaKnown RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 XPNPEP3Q9NQH7 507 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ARHGEF4Q9NR80 690 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 GPATCH2LQ9NWQ4 482 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 NKIRAS1Q9NYS0 192 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 DTLQ9NZJ0 730 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 CTNNAL1Q9UBT7 734 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 ZNF180Q9UJW8 692 aa11.12□□□□□ -0.63
USP4-214ENST00000491791 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.12□□□□□ -0.63
USP4-214ENST00000491791 DNAH12Q6ZR08 3092 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 MEIS3P2A8K0S8 358 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 TMEM189-UBE2V1I3L0A0 370 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 NCAM2O15394 837 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 SNX3O60493 162 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 ATP2C2O75185 946 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 KIAA0754O94854 1291 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 EOMESO95936 686 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 PGK1P00558 417 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 ODC1P11926 461 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 PRKCHP24723 683 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 ADRA1BP35368 520 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 FDFT1P37268 417 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 ARL4AP40617 200 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 SULT1E1P49888 294 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 CLCNKBP51801 687 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 TKTL1P51854 596 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 GAD2Q05329 585 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 ZNF33AQ06730 810 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 TUSC3Q13454 348 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 EIF4EBP2Q13542 120 aaPredicted RBP11.11□□□□□ -0.63
USP4-214ENST00000491791 LPIN1Q14693 890 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 MAPRE1Q15691 268 aaKnown RBP11.11□□□□□ -0.63
USP4-214ENST00000491791 KCNA10Q16322 511 aa11.11□□□□□ -0.63
USP4-214ENST00000491791 MDH1BQ5I0G3 518 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms