RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ZNF252P-AS1Q0IIN9 211 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 LMAN2Q12907 356 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 STIM1Q13586 685 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 CCDC40Q4G0X9 1142 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 SH3PXD2AQ5TCZ1 1133 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 PM20D1Q6GTS8 502 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 ISM2Q6H9L7 571 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 KIAA1324Q6UXG2 1013 aaKnown RBP14.28□□□□□ -0.12
COL6A3-211ENST00000491233 SIX6OS1Q8N1H7 587 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 CPXM2Q8N436 756 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 UBA3Q8TBC4 463 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 GTPBP4Q9BZE4 634 aaKnown RBP14.28□□□□□ -0.12
COL6A3-211ENST00000491233 PILRBQ9UKJ0 227 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 MAN1B1Q9UKM7 699 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 STON1Q9Y6Q2 735 aa14.28□□□□□ -0.12
COL6A3-211ENST00000491233 ACACBO00763 2458 aa14.27□□□□□ -0.12
COL6A3-211ENST00000491233 ASCC3Q8N3C0 2202 aaKnown RBP14.27□□□□□ -0.12
COL6A3-211ENST00000491233 SETSIPP0DME0 302 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 VDRP11473 427 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 CD44P16070 742 aaKnown RBP14.27□□□□□ -0.13
COL6A3-211ENST00000491233 ENGP17813 658 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 HOXD12P35452 270 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 IL12RB1P42701 662 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 ZNF33AQ06730 810 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 STARD3Q14849 445 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 ST3GAL2Q16842 350 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 KLHL10Q6JEL2 608 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 SLC23A3Q6PIS1 610 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 ANKS1BQ7Z6G8 1248 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 FMNL3Q8IVF7 1028 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 FAM217AQ8IXS0 508 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 RNF139Q8WU17 664 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 EDEM1Q92611 657 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 DHTKD1Q96HY7 919 aaPredicted RBP14.27□□□□□ -0.13
COL6A3-211ENST00000491233 MRGPRX1Q96LB2 322 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 HSPA12BQ96MM6 686 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 CEP63Q96MT8 703 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 NT5C1BQ96P26 610 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 IPO9Q96P70 1041 aaKnown RBP14.27□□□□□ -0.13
COL6A3-211ENST00000491233 METTL14Q9HCE5 456 aaKnown RBP14.27□□□□□ -0.13
COL6A3-211ENST00000491233 FSCN3Q9NQT6 498 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 OLA1Q9NTK5 396 aaKnown RBP14.27□□□□□ -0.13
COL6A3-211ENST00000491233 CLEC4EQ9ULY5 219 aa14.27□□□□□ -0.13
COL6A3-211ENST00000491233 MAP1BP46821 2468 aaKnown RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 GON4LQ3T8J9 2241 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 YJEFN3A6XGL0 299 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 E7ENQ6 273 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 MSI1O43347 362 aaKnown RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 LCP1P13796 627 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 CSRP1P21291 193 aaKnown RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 SHC2P98077 582 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 TRIP4Q15650 581 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 DUOXA1Q1HG43 343 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 FUT11Q495W5 492 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 BSPRYQ5W0U4 402 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 TMEM270Q6UE05 265 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 SLC41A1Q8IVJ1 513 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 PPM1KQ8N3J5 372 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 TRIML1Q8N9V2 468 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 DDI1Q8WTU0 396 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 UCMAQ8WVF2 138 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 KCTD13Q8WZ19 329 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 TFAP2BQ92481 460 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 KAT5Q92993 513 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 PIWIL1Q96J94 861 aaKnown RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 THAP10Q9P2Z0 257 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 SFMBT1Q9UHJ3 866 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 CTNND2Q9UQB3 1225 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 HBS1LQ9Y450 684 aaKnown RBP14.26□□□□□ -0.13
COL6A3-211ENST00000491233 PCDHB4Q9Y5E5 795 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 LAMA1P25391 3075 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 CACNA1BQ00975 2339 aa14.26□□□□□ -0.13
COL6A3-211ENST00000491233 M0QYV0 167 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 NDUFS2O75306 463 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 PAEPP09466 180 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 BRD2P25440 801 aaKnown RBP14.25□□□□□ -0.13
COL6A3-211ENST00000491233 PPP1R2P41236 205 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 HARS2P49590 506 aaKnown RBP14.25□□□□□ -0.13
COL6A3-211ENST00000491233 RGS7P49802 495 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 DAOAP59103 153 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 ENPP2Q13822 863 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 EIF4HQ15056 248 aaKnown RBP14.25□□□□□ -0.13
COL6A3-211ENST00000491233 PKDCCQ504Y2 493 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 TTI2Q6NXR4 508 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 LCLAT1Q6UWP7 414 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 DEFB124Q8NES8 71 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 CEP76Q8TAP6 659 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 NELFBQ8WX92 580 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 GTPBP2Q9BX10 602 aaKnown RBP14.25□□□□□ -0.13
COL6A3-211ENST00000491233 CIPCQ9C0C6 399 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 PRDM16Q9HAZ2 1276 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 CNGB3Q9NQW8 809 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 KIAA1257Q9ULG3 409 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 SLC6A14Q9UN76 642 aa14.25□□□□□ -0.13
COL6A3-211ENST00000491233 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL6A3-211ENST00000491233 NYNRINQ9P2P1 1898 aaKnown RBP14.25□□□□□ -0.13
COL6A3-211ENST00000491233 PIK3R2O00459 728 aa14.24□□□□□ -0.13
COL6A3-211ENST00000491233 NPC1O15118 1278 aa14.24□□□□□ -0.13
COL6A3-211ENST00000491233 PMM2O15305 246 aa14.24□□□□□ -0.13
COL6A3-211ENST00000491233 TSPAN3O60637 253 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms