RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SECISBP2LQ93073 1101 aaKnown RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 HEXIM2Q96MH2 286 aaKnown RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 TWNKQ96RR1 684 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 CDK5RAP1Q96SZ6 601 aaKnown RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 PDCL3Q9H2J4 239 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 ACP6Q9NPH0 428 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 CYLDQ9NQC7 956 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 TRMT1Q9NXH9 659 aaKnown RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 CHORDC1Q9UHD1 332 aaPredicted RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 WNT6Q9Y6F9 365 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 HHLA1C9JL84 531 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 PJA2O43164 708 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 COCHO43405 550 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 KRT86O43790 486 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 RTN2O75298 545 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 BEST1O76090 585 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 LSM8O95777 96 aaKnown RBP17.82■□□□□ 0.44
VIM-205ENST00000485947 CYP1A1P04798 512 aaPredicted RBP17.82■□□□□ 0.44
VIM-205ENST00000485947 CD19P15391 556 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 GALK1P51570 392 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 ZXDBP98169 803 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 IFRD2Q12894 506 aaPredicted RBP17.82■□□□□ 0.44
VIM-205ENST00000485947 PREPLQ4J6C6 727 aaPredicted RBP17.82■□□□□ 0.44
VIM-205ENST00000485947 SGO2Q562F6 1265 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 LONP2Q86WA8 852 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 CHFRQ96EP1 664 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 ISCUQ9H1K1 167 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 RBM12Q9NTZ6 932 aaKnown RBP17.82■□□□□ 0.44
VIM-205ENST00000485947 CEP83Q9Y592 693 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 ACACBO00763 2458 aa17.82■□□□□ 0.44
VIM-205ENST00000485947 USP27XA6NNY8 438 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 KRT37O76014 449 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 ADH1CP00326 375 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 H2AFZP0C0S5 128 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 BRD2P25440 801 aaKnown RBP17.81■□□□□ 0.44
VIM-205ENST00000485947 ADORA2BP29275 332 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 ATP5C1P36542 298 aaKnown RBP17.81■□□□□ 0.44
VIM-205ENST00000485947 SATB1Q01826 763 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 KIF5AQ12840 1032 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 CNGA2Q16280 664 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 CLEC16AQ2KHT3 1053 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 H2AFVQ71UI9 128 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 C17orf53Q8N3J3 647 aaPredicted RBP17.81■□□□□ 0.44
VIM-205ENST00000485947 CAMKK1Q8N5S9 505 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 PCDHB18PQ96TA0 734 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 NACA2Q9H009 215 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 LINC00597Q9H2U6 94 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 CLIC5Q9NZA1 410 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 GMIPQ9P107 970 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 CFAP97Q9P2B7 532 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 USP3Q9Y6I4 520 aa17.81■□□□□ 0.44
VIM-205ENST00000485947 BTNL10A8MVZ5 291 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.8■□□□□ 0.44
VIM-205ENST00000485947 K7ESF4 209 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 TLR5O60602 858 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 TUBB4AP04350 444 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 UNGP13051 313 aaPredicted RBP17.8■□□□□ 0.44
VIM-205ENST00000485947 CDH5P33151 784 aaPredicted RBP17.8■□□□□ 0.44
VIM-205ENST00000485947 CENPCQ03188 943 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 ORC1Q13415 861 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 PPP1R26Q5T8A7 1209 aaPredicted RBP17.8■□□□□ 0.44
VIM-205ENST00000485947 ACAD10Q6JQN1 1059 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 TSSK4Q6SA08 328 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 Q6ZS52 159 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 ARHGAP18Q8N392 663 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 ANKRD52Q8NB46 1076 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 TFAP2BQ92481 460 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 ACDQ96AP0 544 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 ZFRQ96KR1 1074 aaKnown RBP17.8■□□□□ 0.44
VIM-205ENST00000485947 LHX5Q9H2C1 402 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.8■□□□□ 0.44
VIM-205ENST00000485947 SH3BP1Q9Y3L3 701 aa17.8■□□□□ 0.44
VIM-205ENST00000485947 FRYLO94915 3013 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 A0A0A0MRY4 1105 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 ANKRD62A6NC57 917 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 KIF2AO00139 706 aaPredicted RBP17.79■□□□□ 0.44
VIM-205ENST00000485947 O00370 1275 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 CALCAP01258 141 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 TMEM253P0C7T8 217 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 NOMO3P69849 1222 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 DHCR24Q15392 516 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 HSF5Q4G112 596 aaPredicted RBP17.79■□□□□ 0.44
VIM-205ENST00000485947 LCLAT1Q6UWP7 414 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 HTR3DQ70Z44 454 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 TMEM35BQ8NCS4 154 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 TTC16Q8NEE8 873 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 RMDN1Q96DB5 314 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 TRIM11Q96F44 468 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 CCSER2Q9H7U1 834 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 SMPD4Q9NXE4 827 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 RAB23Q9ULC3 237 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 SLC8A2Q9UPR5 921 aa17.79■□□□□ 0.44
VIM-205ENST00000485947 EGFP01133 1207 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 CYP17A1P05093 508 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 RALAP11233 206 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 ARHGAP25P42331 645 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 NSFP46459 744 aaKnown RBP17.78■□□□□ 0.44
VIM-205ENST00000485947 PLA2G4AP47712 749 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 GAD2Q05329 585 aa17.78■□□□□ 0.44
VIM-205ENST00000485947 RAB41Q5JT25 222 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms